RNA id: XM_021580662.2


Basic Information

Item Value
RNA id XM_021580662.2
length 2608
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC110502543
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28618507 ~ 28621114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAGCGTTTTCCTTTGCGGACGTGTGTGAAAGATATCCGTAAATGGGGAGTTGGAGAGAAATTTGATGTTGTGTCATACAGAGTACCCCTCACTTAAAATTGAATTCGACTTTCTATTTTTATGTGAAGTTGGAATATATATTTCACCAGGTGTAAACAATCATTCTCaccgagagagggacagacaggatCAACGGCAGCTGTGCTTGAAGCCCAGCCTGCAAAACGCTAGCTAGCAAACGCGAGGCTAGTGTGGAATTACAGAACAGTACTTCACGGGCTTAATGATGCCTCGCGACAACATGACCTCCCTCGTTCAGAAAATTGGTAGACAGGCGCTTGTAACTTTTAGAAACCCATCTTTGGTAGGTGATAAAGCGTTTCTGGATAATCAAGGTAAACTCCAAACCCTCATGACCGAAATCAGAGCTGCGGATCTGAAGATTGCTCCAAGGAAAGTTGACTGCGCGTCTACACCTCTGCCACACAACCCCCCGGTCACATACATGCACATATGCGAGACAGACCAATTCAGCATGGGGGTGTTTCTGCTGAAGAGCGGTGCTTCCATCCCCTTGCACGACCACCCGGGAATGTACGGCATGTTAAAAGTTATGTATGGCAAGGTCAGAATCACCTGTTTTGACAGGTTGGACAAATCAACTAACGTGGCCAGTGACACGCAATTCAAGCCTCCCCTGCTACCTTTCCAGAGAGATACGCTGAGGAGGTCAATACTCCGGTCGGTCGGTGAGTTTACAGAAGAGAGTGGCCCGTGTATTTTGACCCCTGACCGAGACAACCTTCATCAAATCGACGCAGTCGATGGACCTACTGCTTTCCTCGATATTCTGGCACCACCATATGATCCAGATGACGGTAGAGACTGTCATTATTACAAAGTTCTGGAGTCTGCCTCGGACTCGGAGGACAAAAAGGCTGAGGCTCAGGGGCAAAAGGAAGTTTGGCTCATGGAAGTACCGCAACCTTCTGATTTTTGGTGTGGTGGTGAACCTTACCCCGGCCCTGAAGTCAATATCTGAAGCGCACTATGAACGCTGAATTGATGTGAACCATTGATTCTCAGGGCTGTGTCACAACATGGTATAAATGTATGATGGTCATAATTCCTACAATGATGGAGTATTATGGAATGGATATGTCACTGTGGTGTGTAATGGGAAAACATGTTGTGTGAACTAATAGCACTTATACTAAAGTTGGACAAATGCTCACAATCGTCTCTTCAGTTTAGGGGTTGGCCAGTCACAATGCATTTAGCCTGTAATGAAAGTAGTTACTCAGTTGATAAATTGTGATCTTTGTACATCATCTCTAATGTATCTGAAATTACACCAAGTTTATCATGTCTTGAAATGAACTGAAACCATACATTAAACATAACATTTCTAAGAAGAACAATATTGAGGGACTCAAGAATTCACTAAATGGGGTACGCTGTAATACACAATTAATTGGTATATACAACCTGAAACTAATGCCTGAAGAATCGTGTAAGTGTTtcttacaagccagaatgttgactCAAATAACATTTAAAATTACTCTACCAGTTGTCTGGTTTATTCTTTGGCTGCTCTAAATTTGAAACAAAATATCCCAAGGAAAATTTTGTTTACCCAACTTGTTACAGAGCTGGAAGGTATATTGTTCAGTTCCGGGCACTGAGATAAACAGTTTATATTgaattttacattttatttagtcAATAGCTGTTGAACCAAGTATGCCATGATAATGAAAATTATATTCTGCATCGGGAGGATGGAGAACAATCCACACCTTTGTGAGatttttattaatttatattCAGATTTCAAAccttcaacaacaaaaatacagtgTGTAAtgtcctccatcctcccctgatTCATAATGTACTATTTTCATTGCCTAACTTTACCTCTATGCCAAACTGAACCATATACCAACTGGCTCTCTAAAAAGATTGGTTAAGCAACTGAAAGACAAACCTAACAGACAAGCAGTAGCGtaagtttaaatgtaattttattaaACATTCTGGCTTCTATGGAACATTTACATTATTTTGAAGTCATTACTTTCAGGTTGTATATACCAattgtgtattacagcctgaattaatcAGACTTTACAAATGAAATATGTCATCATTTACTATAGGTATGTTTTGATTGGATCAAACTACATTCTTTGAGATAGTCCCATGGGACATGGGTTACTGAATAATTATCTTAAACATTGGTTAGTTAATCGAACTTCACCAATTAAACTTAATCCCCATAATAACTTTGCTTGCTTCATCAATTTGGGAATTTAGCTCATATTTGGCAGAGTGCTATTGAGTTCATTGCTTGCGGCTTAGGGGCCTCTTGTGGACATACTGAGTATTACCTGAGAAGGACAATGTGACTAGTagaatactgtatacagtataggCCTCCCTTGACCGAAACGTCCCTATTTCAGGACATTGTCTTTCATGaaataattcgtaaaaatccaaataacttcacagatcttcattgtaaagggtttaaacactgtttcccatgcttgttcattgaaccacacacaattaatgaacatgcaactgtggaatg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047800 cysteamine dioxygenase activity molecular_function

KEGG:

id description
K10712 ADO; cysteamine dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2118460 lncRNA upstream 21584 28596634 ~ 28596923 (+) True G1850786
TU2118453 lncRNA upstream 24153 28594111 ~ 28594354 (+) True G1850779
TU2118451 lncRNA upstream 24844 28593389 ~ 28593663 (+) True G1850777
TU2118447 lncRNA upstream 26076 28592194 ~ 28592431 (+) True G1850773
TU2118446 lncRNA upstream 26359 28591479 ~ 28592148 (+) True G1850772
TU2118593 lncRNA downstream 159321 28780435 ~ 28780691 (+) True LOC110502549
TU2118726 lncRNA downstream 163991 28785105 ~ 28785309 (+) True G1851026
TU2118727 lncRNA downstream 164407 28785521 ~ 28785741 (+) True G1851027
TU2118800 lncRNA downstream 213508 28834622 ~ 28834828 (+) True G1851098
TU2118831 lncRNA downstream 236161 28857275 ~ 28857531 (+) True G1851127
XM_021580661.2 mRNA upstream 15388 28597913 ~ 28603119 (+) True LOC110502542
XM_021580660.2 mRNA upstream 46979 28497576 ~ 28571528 (+) False LOC110502541
XM_021580658.2 mRNA upstream 152217 28462455 ~ 28466290 (+) False LOC110502539
XM_021580659.2 mRNA upstream 152217 28462506 ~ 28466290 (+) True LOC110502539
XM_021580608.2 mRNA upstream 477834 28098447 ~ 28140673 (+) False LOC110502531
XM_021580663.2 mRNA downstream 12932 28634046 ~ 28652668 (+) True LOC110502544
XM_021580664.2 mRNA downstream 41560 28662674 ~ 28671512 (+) True slc22a15
XM_021580669.2 mRNA downstream 156019 28777133 ~ 28780702 (+) False LOC110502549
XM_021580670.2 mRNA downstream 172780 28793894 ~ 28796862 (+) True LOC110502550
XM_021580671.2 mRNA downstream 197857 28818971 ~ 28823794 (+) True LOC110502551
TU2118352 other upstream 93270 28498023 ~ 28525237 (+) True LOC110502541
TU2117472 other upstream 612293 28001875 ~ 28006214 (+) True LOC110502528
TU2117481 other upstream 625544 27990274 ~ 27992963 (+) True LOC110502527
TU2116734 other upstream 1342248 27274338 ~ 27276259 (+) True G1849208
TU2112363 other upstream 4264261 24326264 ~ 24354246 (+) True G1845108
TU2119099 other downstream 422247 29043361 ~ 29075998 (+) True G1851386
TU2120344 other downstream 1397376 30018490 ~ 30025046 (+) True G1852590
TU2120765 other downstream 1926010 30547124 ~ 30653216 (+) True LOC110502560
TU2120879 other downstream 2184436 30805550 ~ 30806454 (+) True G1853092
TU2120954 other downstream 2205471 30826585 ~ 30832443 (+) False G1853162

Expression Profile