RNA id: LOC110503099


Basic Information

Item Value
RNA id LOC110503099
length 1106
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110503099
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28623373 ~ 28629070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCGGAAAAGGGCAACTCATCCCAGTCCTCAATGGTCACACAGTCCACTGATTTACTCACTTTTAATGGTCGCTGGGTCTCTGAGATGAGCCTCTCCTGGAGTTTCGTCGTCATGAGAGCAGCTGTCCCCCAGGCCACGCCCCAGGCATGGGGTGATCGTTTGAGTGAAGAAAAGGACAATTTCGAGTTGTCTTTCCAGAGCAACTTTACGCAGCCCCCGCGCACTCAGCCTGTTGCATACAAGGACACCGGAATCCCAGGGGCTTCAATAAGTCGTTTGTGATTTAACGACAGCAGCTTCCTCCCCGGTGTCTGCCTCGCCCTCGCCTGAACCACAGAACCTTTACGCATAAAGCCTCACGGTTCGTGAGCTGCACCATGGCGCAGAGTCAACATGATATAAACCACATGTATGCTCCATCATCTTACTCTTGTAGCAGGGAAATGTACCAGGACCAATCAACCTACCTGGCAACCTCGACCTGCCCCATGTCCTACCAACAGCCGTCCCACTCATACACGTCACCAAAGTCGACAGTGGACAGTGCGCTCTTAACCATCATGCCTGACTACAGCGGGTTCTACCAGCCAAATTGCCAACGAGACATCCAGGCTTTTCCTGACAGGAAAGTGTTACCATATTCACTGAACTCGCTGAGGCTTCCACCACCTCTGACACCTCTGAACACAATAAGGAATTTTACACGTGTGGGACCTGCGACAGAGGGCCCTTGTCAACCCAATCCCTACAACACTCCAAATGTACCCCTGAGGCCAATACCGAGGCCGAGAAAGTATCCAAACCGCTCGAGCAAAACGCCTGTCCATGAGCGACCATACCCTTGCCCGGCAGAGAGCTGCGACAGGAGGTTCTCTCGGTCGGACGAGCTGAGCAGACACGTCAGAATCCACACAGGACACAAACCCTTCCCATGTCGGGTCTGCATGCGCAGTTTCAGTCGCAGCGACCACCTCACTACGCACATCCgcacacacactggagaaaaaCCATTTTCTTGTGACCACTGTGGAAGAAAGTTCGCCAGGAGTGATGAAAGAAGGAGACATACGAAAATCCACttaagacagaaagagaaaaagtAA

Function

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2118452 lncRNA downstream 29661 28593298 ~ 28593712 (-) True G1850778
TU2118440 lncRNA downstream 33715 28589438 ~ 28589658 (-) True G1850766
TU2118438 lncRNA downstream 35610 28587470 ~ 28587763 (-) True G1850764
TU2118379 lncRNA downstream 157112 28464588 ~ 28466261 (-) True G1850718
TU2118104 lncRNA downstream 473472 28149615 ~ 28149901 (-) True G1850494
TU2118636 lncRNA upstream 22674 28651744 ~ 28652420 (-) True G1850944
TU2118653 lncRNA upstream 48041 28677111 ~ 28677357 (-) True G1850955
TU2118720 lncRNA upstream 151314 28780384 ~ 28780670 (-) True G1851020
TU2118791 lncRNA upstream 192404 28821474 ~ 28826741 (-) True G1851089
TU2118925 lncRNA upstream 290776 28919846 ~ 28921031 (-) False LOC110502553
LOC110503098 mRNA downstream 143077 28472305 ~ 28480296 (-) True LOC110503098
XM_036960088.1 mRNA downstream 210208 28228538 ~ 28413165 (-) True LOC110502535
XR_005039158.1 mRNA downstream 231078 28391640 ~ 28392295 (-) True LOC118943855
XM_036960103.1 mRNA downstream 260142 28228538 ~ 28363231 (-) False LOC110502535
XM_036960104.1 mRNA downstream 260142 28228538 ~ 28363231 (-) False LOC110502535
XM_021580665.2 mRNA upstream 54369 28683439 ~ 28686654 (-) True LOC110502547
XM_021580666.2 mRNA upstream 58944 28688014 ~ 28693649 (-) False LOC110502548
XM_021580668.2 mRNA upstream 58944 28688014 ~ 28693649 (-) True LOC110502548
LOC110503100 mRNA upstream 230108 28859178 ~ 28878427 (-) True LOC110503100
XR_002470346.2 mRNA upstream 291614 28920684 ~ 28932600 (-) False LOC110502553
TU2118048 other downstream 545122 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 3182986 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 5277602 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 5389950 23182987 ~ 23233423 (-) True G1843946
TU2118971 other upstream 295669 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 2522539 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 2522539 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 2588527 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3350927 31979997 ~ 31981333 (-) True G1855326

Expression Profile