RNA id: XM_021580668.2


Basic Information

Item Value
RNA id XM_021580668.2
length 3239
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110502548
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28688014 ~ 28693649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCAATCTCCGAGTGCTATATGATCACAAACTTTTCTCCAATCCTGGCGATGTGTCAAGCTCTTTAGATATTCAAAACAACGTTATACGTCATCTGCGAAGGTGGATCATGTAGTGTTCCAATATTTATAAAGCGCAGTGCGAACCATACATTGTGGAGGAAAACGTTTGGAGTTTCTCGCTGCTGTCAGCGACTTGGTTCTACATTTAAGACGAGGTAAGACGAGAGAAAGAAGCACGCGTCAGAGTTTGCACAGTAGCACGTGGATGTTTGGAAATGTTCCTTCTGGAGCTCAGTCACTTGTCAGCGCTGCTCACAGCGCTCATGTCTGTGCTCTCCGCCCTGATCCTGCTTGCAGTCTCCAGGCAACTGTGGACTTTCAGGTGGACCATTATGCGGGACAAGGAGTGCAAGTTCCCGCTACCCAATGGATCCATGGGCTGGCCGCTGGTGGGAGAAACTTTCCACTGGCTCTTTCAGGGATCCAACTTCCACATCTCCAGGAGAGAGAAGCATGGCAACGTTTTTAAAACTCACCTTTTAGGAAAGCCTGTTATCCGGGTAACTGGTGCAGAAAACATCCGTAAAATCTTGCTAGGAGAACACAACTTGGTCTGCACGCAGTGGCCCCAGAGCACCCGCATTATCCTGGGACCAAACACCCTGGTCAACTCTATCGGAGAGCTGCACAAGAAGAAGAGAAAAATCTTAGCAAAAGTGTTTAGCCGCGGGGCCTTGGAGACTTACCTACCCCGCTTGCAAGATATTGTCAAGTCTGAAATTGCAAAGTGGTGCTCGGAGCCTGGCCCAGTGGATGTTTACGTCGCAGCCAAATCTCTCACATTTCGCATTGCAGTCAGAGTCTTGTTGGGACTGAAGATGGAGGAAAAACGCATAGTATACCTTTCTAAGATCTTTGAGCAACTCATGAACAACCTCTTCTCATTACCAATTGACGCACCTATGAGTGGCCTCCGCAAAGGAATTAAAGCCAGGGAAATCCTACATACGTGCATGCAGAAAATCATAGAGGAGAAAATGCAGAAACAACAGTCTGAGGAGTACTATGACGCTTTCGATTACATGTTGAGCAGTGCCAAGGAAAACGGACATGAACTGAGCATGCAGGAGTTGAAGGAAACCGCGGTGGAGTTAATATTTGCTGCTCACTCAACTACGGCCAGTGCTTCCACTTCGCTTATTCTTCAGCTCCTGCGGCACCCCGCTGTGGTGGAGAAAGCCCAGATAGAGCTGGAGTCAGAGGGTCTCGGCTACGACGCACACAGCGCCCACAGCTGCTCCAGTAAAGAAAATGGTCTGAATTGTCCTCTTGCGGTCGAACAAGGGGAACATCGGCCTCTAGACGCAGAGACCACCCCCTTGATGAATGGGAACGGGACTTTTCATTGCGCACCGGATGAAAACGAAGAGGCACCGTGTTCTCGGTCTCATATTCCTTGCTTAACTATGGAGAAACTGAGCCAGCTCCGTTACATTGACTGTGTTGTCAAGGAGGTGCTGCGGTTTCTCCCGCCAGTATCTGGAGGATACAGGACGGTGCTGCAAACATTCGAATTGGACGGCTACCAGATTCCTAAAGGATGGAGTGTGATGTACAGCATCCGAGACACACATGAGACAGCTGCAGTGTTCCAGAGCCCTGAGATATTCGACCCAGACCGCTTCGGTTCCGAGCGTGAAGAGAGCAAGACTGGGCGCTTTAATTACGTTCCATTTGGTGGCGGAATAAGGAGTTGTGTCGGAAAGGAACTTGCCCAAATGATATTAAAAACCCTGGCCGTTGAGGTGATTGGCACGTGCAAATGGACCCTCGCCACGGATACATTCCCCAAGATGCAGACAGTGCCAATAGTCCATCCCGTCAATGGACTGCATGTGCATTTCAATTACGATAGCCTACTCCGATAGAGTTGAGATAAGTAATTGTGTTATTAAAGACATTAAGCTCATGAACTTTTCGCAATTACAATATTAAGTTATTAAATCAGAATACATAGTCAAGAAACCTTTCCTCTTCGTTCCGAATATCGTGGAAATGGTAAAAACATGGTGGTCATTGAAGAGTGGAAGCAAGGCATGGTGCCAGTGACCTTCGATGACCTGCTTATCGCCAAGATCGCCTTTTTTTCACCCACTGGGAAAGGTGACGGGAAACTTTTGCTATTGTTCACGGACATCCGGGCGCTCACTTTATAACATAGCAAATCGAAAGATGATATATAATTTTTAAGCACCCTAATGCAATATATAATGGACGAGTAGGGCTTTCTTCTCAGAACAAACATTATTTGTGCTCAGGATGTGCGTCTATAATGTCCGTCTATAATGCGAAACTGTCTTACAGATCTTGCACTTGGTCTCCACGAAAAACATTTAGAAATACCTTCAaaatgtatgtgtttatgtgaGTAGATATAAATGAGATATAGGCCAACATATAGGCCAACAGTAGgctatgtgtgtgtataaagttATGTGTGTATACAATGAAGTAGTACCAATAAGCTTTATTTATAGAACATTTCGGCTAAGTCTGTGTTAAGATGGAATAATTATGAATAGACCTAGTTATTTAGATATCATAAGACATTAACTAATGTAAAGCTTAGACCGTTAAAACAAAACCATATAGGCCTAGAGCTTTTATTCGATTATTTAGAGGCTATACATCAACATGCAATTATATAATGTTACCTAGAGAATATaaccaattattattattattattattattacatgtgTCATCTTTATAAATAATCGCTTGTTGATTTTGAAGCATGATGGAAGCGCTGTGAAATGACTCAGTTAATTAAGATGGATTCATGGAAGGAGATAGCACTTTTTCTCCTTTACggagtgtgtatatacagtatttgtcCTATTGATTCAATATGTGTATTGTTTTGTGTATTGCTCGTATTATCTATAGAACGATGTTAAGATTAAATTGCAAAAAGGTGTATTTTTGCCATTGGATAGGAAATTCTACCATGACAAAATGTGCAATTGTTGCCATCATGTTAACCACAATGAATAGATTCCCGTTCTATTAAAAGAAAAATATGAACTTGTTCATAGataaaatggttaaggttttaATCATATGACATTTGAAAGTGTGCCAGTATTATCACAGTATAAGCCTATTCAATCTTTCATGACATATTGTATGTTTTTAATTGGATATACCGAAATATAGTCAATTGTTAGCGTAAA

Function

GO:

id name namespace
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0042573 retinoic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K12665 CYP26C; cytochrome P450 family 26 subfamily C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2118653 lncRNA downstream 10657 28677111 ~ 28677357 (-) True G1850955
TU2118636 lncRNA downstream 35594 28651744 ~ 28652420 (-) True G1850944
TU2118452 lncRNA downstream 94302 28593298 ~ 28593712 (-) True G1850778
TU2118440 lncRNA downstream 98356 28589438 ~ 28589658 (-) True G1850766
TU2118438 lncRNA downstream 100251 28587470 ~ 28587763 (-) True G1850764
TU2118720 lncRNA upstream 86735 28780384 ~ 28780670 (-) True G1851020
TU2118791 lncRNA upstream 127825 28821474 ~ 28826741 (-) True G1851089
TU2118925 lncRNA upstream 226197 28919846 ~ 28921031 (-) False LOC110502553
TU2118968 lncRNA upstream 229773 28923422 ~ 28923668 (-) True G1851260
TU2118970 lncRNA upstream 230513 28924162 ~ 28924383 (-) True G1851262
XM_021580665.2 mRNA downstream 1360 28683439 ~ 28686654 (-) True LOC110502547
LOC110503099 mRNA downstream 58944 28623373 ~ 28629070 (-) True LOC110503099
LOC110503098 mRNA downstream 207718 28472305 ~ 28480296 (-) True LOC110503098
XM_036960088.1 mRNA downstream 274849 28228538 ~ 28413165 (-) True LOC110502535
LOC110503100 mRNA upstream 165529 28859178 ~ 28878427 (-) True LOC110503100
XR_002470346.2 mRNA upstream 227035 28920684 ~ 28932600 (-) False LOC110502553
XR_002470431.2 mRNA upstream 275518 28969167 ~ 28981838 (-) False LOC110503060
XM_021580673.2 mRNA upstream 427397 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA upstream 427397 29121046 ~ 29632760 (-) True LOC110502554
TU2118048 other downstream 609763 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 3247627 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 5342243 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 5454591 23182987 ~ 23233423 (-) True G1843946
TU2118971 other upstream 231090 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 2457960 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 2457960 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 2523948 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3286348 31979997 ~ 31981333 (-) True G1855326

Expression Profile