RNA id: LOC110503100



Basic Information


Item Value
RNA id LOC110503100
length 1182
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110503100
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28859178 ~ 28878427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGATCTGGATCAGACCAAAGACTGTGGGTTACTCTCTTCCTCTTCACGGAAATCTTCATGCTTCCATATTGGCAGTTATTTTTCCCAATCCATTATtttgtcctctcttctcctcctcaggtTCTCTTTATGCCAGTTCCCATTTATCCTGTCAACAATGGTGAAGAGAACCATCTTCCAGAGGGACTCAGAACAGCAGATGATCTGCATGGCCAGACAAAGCTTGGTGAACAAGGTCTCCCGCAGGCAGAGAGTGGACATGAACCTGCTGTTCCTCAACATCAAGGTACGACGGGCCCAGCTACTCAACGACTCACTGGATGAGCTGAGCAGGAAGAAAGTGGACCTAAAGAAAAAGCTCAAGGTGACCTTCATAGGAGCGACAGGGCTCGACATGGAAGGCCTCACCAAGGAGTGGTTCCTGCTGCTGCTTCAGTAGATTATTCACACTGACTATGgcATGTTTACCTACTTGAAGGATTCCTGTTGTCATTGGTTCAGCAGCTGGAAGTGTGACAACTACTCTTGAGTTTCAATTGGTTGGGACTCTCATGGGTCTCGCTGTGTACATCAGCATTTGCCTGGACATCTAGTTCCCTCCATACTGCTACAACAAGCTCTTGACTCCACACATCGTGCCAAGTGACCAGAATACTCCTGCCAGCATGGCAACCACTACGCCGGGCGACCTGCATCAGGTTATTCCATATTTTCCATTTCTGAACCTGGCAAATGGGTTTGGAGAGCTGCTCAGCTATAAAGGCAATTGGAGGAAGACTTCTAGCTGACCTTCcagGTTTTCCAAGAGGAGCTTGTCGTGGTCAAGTCCTATAACCTGAAACCTGGAGGTGACAAGATCCTACTGCTGAGACTTGAGGAGGTGGAAATCCTGGTATGTGGGACTCCAGAGCCGGGCATGAGCGCCCTGCAGAAAGTAGCTCAGTATGAGGGCTACAGCAAATCTGACCTTACAGTACGCCATTTCTGGGACGTGGTACTGGCCTTCCCCTTGGAGCTGCAGAAGAAGCTGCTCCACTTCGCCACAGGAAGTGACCGTGTCCCCGTGGGAGGGTTGGTTGACCTCAACTTCAAGATCGCCAAGATCGACGTGTCCACTGACTGGCTCCGCTTTGTCATCAAAATGGACAACCTTGAAATGAGTGACATGTCTCCATTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2118791 lncRNA downstream 32437 28821474 ~ 28826741 (-) True G1851089
TU2118720 lncRNA downstream 78508 28780384 ~ 28780670 (-) True G1851020
TU2118653 lncRNA downstream 181821 28677111 ~ 28677357 (-) True G1850955
TU2118636 lncRNA downstream 206758 28651744 ~ 28652420 (-) True G1850944
TU2118452 lncRNA downstream 265466 28593298 ~ 28593712 (-) True G1850778
TU2118925 lncRNA upstream 41419 28919846 ~ 28921031 (-) False LOC110502553
TU2118968 lncRNA upstream 44995 28923422 ~ 28923668 (-) True G1851260
TU2118970 lncRNA upstream 45735 28924162 ~ 28924383 (-) True G1851262
TU2118982 lncRNA upstream 64287 28942714 ~ 28943017 (-) True G1851273
TU2118985 lncRNA upstream 68685 28947112 ~ 28947406 (-) True G1851276
XM_021580666.2 mRNA downstream 165529 28688014 ~ 28693649 (-) False LOC110502548
XM_021580668.2 mRNA downstream 165529 28688014 ~ 28693649 (-) True LOC110502548
XM_021580665.2 mRNA downstream 172524 28683439 ~ 28686654 (-) True LOC110502547
LOC110503099 mRNA downstream 230108 28623373 ~ 28629070 (-) True LOC110503099
LOC110503098 mRNA downstream 378882 28472305 ~ 28480296 (-) True LOC110503098
XR_002470346.2 mRNA upstream 42257 28920684 ~ 28932600 (-) False LOC110502553
XR_002470431.2 mRNA upstream 90740 28969167 ~ 28981838 (-) False LOC110503060
XM_021580673.2 mRNA upstream 242619 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA upstream 242619 29121046 ~ 29632760 (-) True LOC110502554
XM_036960861.1 mRNA upstream 862128 29740555 ~ 29746968 (-) True LOC110528531
TU2118048 other downstream 780927 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 3418791 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 5513407 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 5625755 23182987 ~ 23233423 (-) True G1843946
TU2118971 other upstream 46312 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 2273182 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 2273182 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 2339170 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3101570 31979997 ~ 31981333 (-) True G1855326

Expression Profile