RNA id: TCONS_00052480


Basic Information

Item Value
RNA id TCONS_00052480
length 408
lncRNA type sense_over
GC content 0.31
exon number 2
gene id XLOC_026637
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39112314 ~ 39113547 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataaataaattataagaacattttcatattagtcaataattattgctgaaattaatttaaaTAACAGAATATGAATGATGACtggattatatatataatattccgCCCATGTCCCCCCAAGTATTCACCTAATTCTCCGTGTACGAGCGTGCGCAGCCATTTAAAACTTTTaagcacgagacttccggtcttattcactttcgttcatttttagatgttaaaaacagcttgttttgctgtttgttttttgtttttttgcaaactgatattttctttgtatattattatattttgtctgtatagtcatgaacacacttctTTGtaaagtagtttgaccattttctgccggttattattcctggtcatttctcccatagacaactaaatcagaagttctaaacaatcac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053079 lncRNA downstream 136616 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00053078 lncRNA downstream 136700 38971435 ~ 38975614 (-) False XLOC_026636
TCONS_00052479 lncRNA downstream 136959 38971435 ~ 38975355 (-) False XLOC_026636
TCONS_00053077 lncRNA downstream 138973 38971435 ~ 38973341 (-) False XLOC_026636
TCONS_00051885 lncRNA downstream 582898 38525979 ~ 38529416 (-) True XLOC_026631
TCONS_00051904 lncRNA upstream 258326 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00053080 lncRNA upstream 448237 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051912 lncRNA upstream 578811 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00051913 lncRNA upstream 832318 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00053081 lncRNA upstream 1066589 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051893 mRNA downstream 193617 38914269 ~ 38918697 (-) True XLOC_026635
TCONS_00051891 mRNA downstream 196316 38912557 ~ 38915998 (-) False XLOC_026635
TCONS_00051889 mRNA downstream 328363 38762891 ~ 38783951 (-) False XLOC_026634
TCONS_00051890 mRNA downstream 334761 38765532 ~ 38777553 (-) True XLOC_026634
TCONS_00051888 mRNA downstream 366716 38705425 ~ 38745598 (-) True XLOC_026633
TCONS_00051895 mRNA upstream 22070 39135617 ~ 39171968 (-) True XLOC_026638
TCONS_00051896 mRNA upstream 62313 39175860 ~ 39180048 (-) True XLOC_026639
TCONS_00051897 mRNA upstream 67840 39181387 ~ 39190317 (-) True XLOC_026640
TCONS_00051898 mRNA upstream 78268 39191815 ~ 39198113 (-) True XLOC_026641
TCONS_00051899 mRNA upstream 86535 39200082 ~ 39208714 (-) True XLOC_026642
TCONS_00051892 other downstream 193597 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051881 other downstream 1338514 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 1412363 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051859 other downstream 2036501 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 2144321 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051900 other upstream 124549 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 535898 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051914 other upstream 843811 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 975138 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051924 other upstream 1040747 40154294 ~ 40158687 (-) True XLOC_026658

Expression Profile

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