RNA id: XM_036960861.1


Basic Information

Item Value
RNA id XM_036960861.1
length 2940
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110528531
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 29740555 ~ 29746968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCCATATCCAATGACAGCGGCCCAAAACCACTGGATGGCAAACAGGGGAAGAGGATACTCACCAAGAGTAAGAGGAGGAGTCCGCCCAATGATGTATCAACCACGAGTTCCCCCTCAACCTGCATACAACCACCCTACTCCAGACCCAAATCAGCAACCACCACCTCCTTTCCAGGGCATGTCGCACGACTATGCCCCTTGGTCCTGAAGATGCCCACCACCACCGGACGGGAGGGAGGGATGTTAATGTTACCCCTCATCCCATCCCCTGTTCTGTCGGGAACACAAGAAATCTATTGGCTGAAATGTGTGGACACAGGCCCAGGGACTCCAGCAATCCAATTTCACTTCAACCAACTGAAACAACAGATCTATGCACTGCATCCATACAAGACCCCACAGGCTGAGATCCACTGCACACTCAATGTAACGGATGATGACGTCAACCCATACACAGACGACTGGGATGAAAACATGATGCACCTCACTCCATCCATCAGATGTTGCACCATCGTCTGCGGTCAGGAAGGAGTCGCAGCACCAGTCATACTACCACCTTATCTGAAATCATGGTTCCTTCTAGGGGAGGAGTCAGCACCCCATGTCACACTAGCTGTGGGTAATGGTTTCGAGGCCAGAAGCTTGGGCCCAATGATCAGGCGAGCATCAAAACTGGAGTGGGAACCAACCCAAACACCGGGGATACACAAAGCCATCACGGAGGAAATGTGGAGGTTTATGACAGTCGATACTGAAGAACACTGCCTACCGGAAAGACTGACCCTGCCTAGACACCATGGCAAGCCATACACAGACCACCCGTCTACTGAAGCATTGCTCTCTACCATAGATGAAAAGATATGGACTCACACCCCTTTCGATGTTGGTAAGCTACAAGTGGCCCCAGTCTCCATTACACTATTGGATCCAAACCAGATACCTATATACCGAACTCAGTATCGTCTAAAGCCTGAACAAACCAATGGGATCATGCCAACCATTTATGGGCTGTTAGGGGCTCAGGTGATTTATCGAACTGTCTCCCCATGGAACACACCCATTCTACCAGTACTGAAGGCAGGGGGAGAAACATACCGGATGGTACAAGACTTCCGAGCAGTGAATGACGTCACTGCACCTATAgacctgcctgtccctgaccctcaCATCACTCTGAGCAACTTGTCACCGAGACACCAGTATTTCACGGTCGTGGACTTGGCTAATGCATTCTTCAGCATTCCTTTGGATGAAGCATCCCAACCACTTTTTGCATTCACCTATGAAGGACAGCAATTTACTTACTCCGTCTTGCCAATGGGGTACAGATGCTCCCCCGGGATTTTTAACCATATCCTCAAGACTCACCTGGCAGAGCTGAAAATTCCAGAGGGGGTGATTCTGATCCAGTATGTAGACGACCTGTTGTTGGGGGCTCCCACTTCGGATCTCTGTCTACAGATGACAAAATCATTACTAGACTTCCTTGCAGTCAAGGGATACAAGGTAAAGAAGAGTAAGGTCCAGTCCTGTCGCAGAACTGTCCTTTTTTTAGGCAGAGAAATCTCTGGGGAAGGTGCAGGGCTCTCCAAAGGCCACAGAGACTCGATACTCCATCATCCACGCCCCATCACAGTGTCAGGAATGTTGTCATTCCTTGGGCTGACTGGTTACAGCCGCACACACATCCCTGACTTCACTGGCAGAACTGAGCCCTTGAGGGAAATGGTGCGTGAGGCGGGGTCGAGAAACCTACACTCACCACTGGTATGGACTCCTGAAGCATCATTGGCGTTTTCACTCTTGAAGACGGATCTCTCAGTGGCCGCAGCTTTAACCGCACCTGACTACAAAAACAAATTCCATCTTGATGTTTCGGAAAAGGAAGGATTTACGTCATCCATCCTTTTTCAGAAacaaaagggggagaggagagtgctgATGTATCACTCCTCGAAACTGGACCACATTGAAGTAGGACAAACCACATGTTCTAGGTATATGGCTGCAGTGGCAAAAGCCATTGAAAAAACCGCCCACCTGGTAATGTGCCATCCGTTGGAAATCCACACCCACCACGGAATTGCGGCATATCTGATGAGCAAAGAATTCACATTCAGCGCCGAAAGAAAAACGAAAATTCAGAACAAatgcacacaatcacacatcACATTTGTCAACACTGAAAAAAACATGGCTGACGCGCTCAACGCGGAAGAAGGACTGCCCCATTCCTGTGCGGAACGAGCTGCACAAGAATTAAAACTGAGACCTGACCTGGGGAATGAACCACTCTGTAACCCCGACCTATGGTTGTACACAGACGGATGCTGTTACAGAGGAGAAGATGGAAACGTAGCAGCATATGCAGTGGTGCAGCAGCTGCCGGATGGATCACACGTGACCCTGGAGTCGGCGATCATTCCGCAACCTGCATCAGCTCAATTGGCTGAAATCATAGGCTTGACACAAGCATTGAAAGGAGCTGAAGGAAAAACTGTAAATATTTACACCGACTCGGCATATGCCCATGGAGCAGTTCATACGGATGGACCACAATGGGTGAGGCGCAACTTCACCACCACAGGGAACCTTCCAAttaaacacaagacacagatggAGAAACTGATTACATCCGTTTCTCTACCCAAAAAGGTGGCCATCATGAAGTGTAAAGGACATCAACAACTGAAAAACAGAGTCAGCGAGGGGAATGATGCAGCTGACAAAGCAGCCAAGAAAGCTGGTGTGGGTGATTTGGTGACCCGGATACAGGCTGTGGACCCACAGTTTCTGCCTACCAGAACCAAGCGGGAAGCAGCCCTGACTGTTGGGGATCCCACGTATATTGATGCTATGGGTGTTCCTAGGGGGGTCCCTGATGAGTACAAGCTGGTGGACCAGGTCGCCGCAGgaGGATCCTCTGGTGGAGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2120014 lncRNA downstream 71874 29668389 ~ 29668681 (-) True G1852273
TU2120004 lncRNA downstream 79397 29660927 ~ 29661158 (-) True G1852263
TU2120001 lncRNA downstream 80924 29659371 ~ 29659631 (-) True G1852260
TU2119988 lncRNA downstream 86528 29653758 ~ 29654027 (-) True G1852247
TU2119874 lncRNA downstream 215822 29524511 ~ 29524733 (-) True G1852136
TU2120239 lncRNA upstream 32401 29779369 ~ 29779695 (-) True G1852487
TU2122008 lncRNA upstream 207856 29954824 ~ 29955041 (-) True G1854107
TU2122012 lncRNA upstream 214761 29961729 ~ 29961935 (-) True G1854111
TU2122018 lncRNA upstream 221000 29967968 ~ 29968248 (-) True G1854117
TU2122019 lncRNA upstream 221442 29968410 ~ 29968703 (-) True G1854118
XM_021580673.2 mRNA downstream 107795 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA downstream 107795 29121046 ~ 29632760 (-) True LOC110502554
XR_002470431.2 mRNA downstream 758717 28969167 ~ 28981838 (-) False LOC110503060
XR_002470346.2 mRNA downstream 807955 28920684 ~ 28932600 (-) False LOC110502553
LOC110503100 mRNA downstream 862128 28859178 ~ 28878427 (-) True LOC110503100
XM_021580677.2 mRNA upstream 407101 30154069 ~ 30504037 (-) False LOC110502559
XM_036960140.1 mRNA upstream 407101 30154069 ~ 30504037 (-) False LOC110502559
XM_036960141.1 mRNA upstream 553136 30300104 ~ 30504037 (-) False LOC110502559
XM_036960142.1 mRNA upstream 610319 30357287 ~ 30504037 (-) True LOC110502559
XM_021580680.2 mRNA upstream 936489 30683457 ~ 30707617 (-) False LOC110502561
TU2118971 other downstream 808010 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 1662304 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 4300168 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 6394784 23345091 ~ 23345771 (-) True LOC110502462
TU2111172 other downstream 6522285 23215485 ~ 23218270 (-) True LOC110502461
TU2122822 other upstream 1404641 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 1404641 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 1470629 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 2233029 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 2768098 32515066 ~ 32515408 (-) True G1855821

Expression Profile