RNA id: NM_001281400.3


Basic Information

Item Value
RNA id NM_001281400.3
length 1778
RNA type mRNA
GC content 0.52
exon number 10
gene id gfra1a
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 30043527 ~ 30144813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGTCTCCTTATGATATTTTATCGTTGTCTTTTGTTTAGTTTTTACACGGAAAGAAAATCATTCTGTGGTTGATGGTTTCGGTTGCCTGCCGCAAAATTGGAGTACTTTTGGGTTGGAATGTTTTACgcatgaagtcagctggatgtgtTCCGAATATCGGACCTCATGCCACGATGTTTTCAATGGATTTGAATAGATTGGAATAAAAGCACGAAGTTTTTTTTCTAGACGTTCTATCAATTCCATTGTAACAAGGCATCGCACGGATAGATACGCAATGATCTTCGTCACTCTTTATGTCGTTCTGCCTCTTTTAGATGTTTTGTATGCCCAGGAGAATGCTCTTTCTGGTCCCAACCGCCTCGATTGTGTCAAGGCGAGTGAGCAGTGTATGAAGGAGCAAGGATGCAGTACCAAGTATCGGACAATGAGACAGTGCGTTGctggggggaaggagagaaactTTAGCATGGTGGCTGGACTGGAGGCGCAGGACGAATGTCGGAGTGCCATAGACGCAGTCAAGCAGAGCCCCCTGTACAACTGCAGGTGTAAAAGGGGCATGAAGAAAGAGAAGAACTGCCTTCGCATCTATTGGGGAATCTATCAGACTTTGCAAGGGAACGATTTCCTGGAGGACTCCCCTTACGAGACCATGAATAGCCGGCTGTCTGACATGTTCAGACTGGCCCCCATTATTTCAGGCGAGCCCGCGGTGACGAGGGAAAACAACTGTCTGAACGCAGCCAAGGCCTGCAACCTGAACGACACCTGTAAGAAGTACCGCTCAGCCTACATCAGCCCCTGCACCAGCCGTGTCTCCACTGCGGAGGTCTGCAACAAGCGCAAGTGCCACAAGGCCCTGCGGCAGTTCTTTGACAAGGTGCCACCCAAGCACAGCTACGGGATgctgttctgttcctgtccagcCGGCGATCAGTCGGCCTGCTCCGAGCGCCGGCGCCAAACCATTGTACCAGTCTGTTCCTATGAGGACAAGGAAAAGCCCAACTGTCTCTCCTTGCAGGCCTCTTGCAAGACCAACTACATCTGCAGGTCCCGTCTGGCTGATTTCTTTGCCAACTGCCAGTCTGAGccacgctctctctctggctgtcttaAGGAGAACTACGCTGACTGCCTGCTCTCCTACTCTGGCCTTATCGGTACAGTGATGACACCCAATTACCTGCGTTCTCCTAAGATCAGTGTTGTTCCCTACTGTGACTGCAGCAGCAGTGGCAATGGCAAGGAGGAGTGTGACAAGCACAGAGTTCTTCACAGACAACACCTGCCTCCGCAAAGCCATCCACGCGTTTGGGAACGGGACAGACGTGGGAGTGTGGCAGCCCATGCCTCCGGTGcagaccaccacctccaccaccactccttCCCAGAAGGCTAAGGACCGCTCCCCCAACTCACTGGATGCCGCCACAAACACCAACCATCTCAACACAGGAGACGAGTCCCTCTACCACTTCTGTGGCAGCTTGCAGGCACAGAAACTGAAGTCTAACATCTCAATTGATGGGGTGCTTTGCGTGGACCCACAGATCGACGACCCTGGTATATCCAACTCCATCTCCAGGAATTCAGCCGGGCTGCCGTCATCTCAGGCACACCTATACTCACTGCTGCTCCTGCTGGCCGTGCTGCTACACTGCACCCTGGCAGCGCTCGACCCCGCAGCAGTCTTGTAGCCATGCTGCATTTCAAAAACATGGACAGACTCAATTTGTATAAAGAAGAAATTATATTCTCTGTTCccagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2120386 lncRNA upstream 76213 29967213 ~ 29967421 (+) True G1852632
TU2120385 lncRNA upstream 76502 29966859 ~ 29967132 (+) True G1852631
TU2120384 lncRNA upstream 78451 29964886 ~ 29965183 (+) True G1852630
TU2120382 lncRNA upstream 79189 29964221 ~ 29964445 (+) True G1852628
TU2120325 lncRNA upstream 159001 29884415 ~ 29884633 (+) True G1852573
TU2120802 lncRNA downstream 455043 30597435 ~ 30600086 (+) True G1853031
TU2120884 lncRNA downstream 566361 30708753 ~ 30709917 (+) True G1853097
TU2120887 lncRNA downstream 572694 30715086 ~ 30716130 (+) False G1853099
TU2120886 lncRNA downstream 572970 30715362 ~ 30716130 (+) True G1853099
TU2120945 lncRNA downstream 676621 30819013 ~ 30819225 (+) True G1853156
XM_021580675.2 mRNA upstream 47823 29993597 ~ 29995811 (+) True si:ch1073-126c3.2
XR_005039165.1 mRNA upstream 427064 29613252 ~ 29616570 (+) True LOC118943859
XR_005039164.1 mRNA upstream 908781 29131643 ~ 29134853 (+) True LOC110502556
XM_021580672.2 mRNA upstream 1126228 28901697 ~ 28917406 (+) False LOC110502552
XM_021580679.2 mRNA downstream 442504 30584896 ~ 30659333 (+) False LOC110502560
XM_021580686.2 mRNA downstream 524152 30666544 ~ 30682724 (+) False LOC110502563
XM_021580688.2 mRNA downstream 524156 30666548 ~ 30682724 (+) False LOC110502563
XM_021580689.2 mRNA downstream 524161 30666553 ~ 30682724 (+) True LOC110502563
XM_021580698.2 mRNA downstream 585996 30728388 ~ 30816688 (+) False LOC110502565
TU2120344 other upstream 18588 30018490 ~ 30025046 (+) True G1852590
TU2119099 other upstream 967636 29043361 ~ 29075998 (+) True G1851386
TU2118352 other upstream 1518397 28498023 ~ 28525237 (+) True LOC110502541
TU2117472 other upstream 2037420 28001875 ~ 28006214 (+) True LOC110502528
TU2117481 other upstream 2050671 27990274 ~ 27992963 (+) True LOC110502527
TU2120765 other downstream 404732 30547124 ~ 30653216 (+) True LOC110502560
TU2120879 other downstream 663158 30805550 ~ 30806454 (+) True G1853092
TU2120954 other downstream 684193 30826585 ~ 30832443 (+) False G1853162
TU2121485 other downstream 1478025 31620417 ~ 31624180 (+) True LOC110502584
TU2121728 other downstream 1725472 31867864 ~ 31869690 (+) True morn2

Expression Profile