RNA id: XM_036960140.1


Basic Information

Item Value
RNA id XM_036960140.1
length 7580
RNA type mRNA
GC content 0.48
exon number 30
gene id LOC110502559
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 30154069 ~ 30504037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCATGCTCGGAGCTTTGTCCAGGAGTTTCACCGTTGAAAAACCAGCTGTGCGAGCATCTTCACGAAGGGGACTCGTGTTGTTATTCATCGGCGAATATCGCTCTCTCTGACAAGGATTAAAAGGATTTTAATGCAAATAACTCGTTATCTTCGGTGAATGCGCCTAACCTGGACGTGGGAAAAAGCGGAACGGAGAACGGTCAACTTGATCTATTTGTCCGGGTTGCTGCATTCTCCACCGCAGCGAACAACATCCAAAACCGACTCTTGCAATGGAAATAGGAATCCAGAACTAACATCAATCCTGTGACAAACTCTTTTCTTCCAGTTTTTCTGGAAACATTAGAATGGCGAACTTGAAAATTGCTTGGAAAATACTTCATTTAGAATAGGCCTACAACTTATACACAACAATTTTCTTTGGTTTTTTAAAATGGCTTCTTAGCCTGAGGGAATAACGGTGTGTGCATTCATTAGTTCAAGAAAGTTTAATAGGAGTGCATTAAAGTCAGTGCAAATTTCCAAGCTTCGTTGTCCGATGATGCTCTAACGTTAGTTGCCTGAGATGACTCTAGCAATATGCTCAGATTTCAGAGTTATGTTTATATAGTCTATAAATAAGCCTATTTGGACGTTGAGTGTATGTATTATTACACTTTATGGCTATCCCATGCATACGCCCATGCTTTGTTTACAAATGATGTATTACCAATAAGTGACGTATAGTTGGTCACTCCAGCTGTTTAAGTGTGAATAAGGGAGTCTTCACCAGAAAAGTAGACCTTTACCTGTTTCTAAAGTAGAATGGGTGGGGACTGCCGCGGAATGCGTCGACGCACATGGACTAAATATTCAAATACGAGACCCCAGGACATACAAATATATTTCGGGGCATTTCTTATGCTGTACTTGGTGTTTTACACCGAAGCATCAGTCTCCAAGTCCTGTGATAAAAATTGCTTCTCTGGGAAATGCACCAATGGGACTTGCGTCTGTGACCAAGGATGGGTTGGAGACCTGTGTCAACACTGTCAGGGAAGATTCAAGTTAACAGAGCCATCGGGTTCCCTCACCGATGGACCAATCAACTACAAGTACAAGACCAAGTGCACCTGGCTGATCGAGGGCTACCCAAACGCTGTGCTCAGGTTGCGCTTCAACCATTTTGCCACGGAATGTAGCTGGGACCACACATACGTCTATGACGGAGACTCCATCTATGCACCTCTGGTCGCAGTATTCAGCGGTCTCGTTGTCCCGGAAACGAGAGGGAACGAGACTGTTCCGGAAGTGGTAGCCACCTCTGGATATGCACTGTTGCACTTTTTCAGTGACGCTGCCTACAACCTGACTGGATTCCACATATCCTACTCGGTCAACTCGTGCCCCAATAACTGCTCAGGCCATGGGAAATGCAGCACAGGGAACTCCATCGCCAGCCGGGTGTACTGTGAGTGTGATAAGTACTGGAAGGGCGAGGCCTGTGACATCCCCTACTGCAGGAACAACTGTGGCAGCCCCGACCATGGCTACTGTGACCTCACTGGGGAGAAAAGCTGTGTCTGTAACGACAGCTGGCAAGGTCCAGACTGTGCTCTGTCAGTACCATCCACAGAGTCTTATTGGGTGATGCCCAACGTCAAGCCCTTCGGACAGTCTCTGGGCAGGGCCTCCCATAAGAGTGTGGTCCACGGGAAACTCATGTGGGTCGTTGGAGGATACACCTTCAACTACAGCTCCTTCCACATGGTGCTCAATTATAATATGGAGAGCAGCACTTGGGATGTGGTGCCAATCAATAGTGGTCCTCTGCAGAGATATGGCCATTCTCTGGCTCTCTACCAGGACGACATCTACATGTATGGGGGGAAGCTGGAGGCCGGTTCAGGCAACGTGACAGATGAGCTGTGGGTCTTTAACATCCCTAGTCGAACTTGGTCCCTGAGGACCCCGAGCAGCCTGGTCCAGGGACAGCCCTACGCCGTGGAGGGACACTCCGCCCACCTGACTGAGCTGACCAATGGGGACCTGGTGATGGTGATCATTTTCGGCTACTCACCCGTCTACAGCTACATCAGCAAAGTGCAGGAGTACAACATCAGGACAAACTCCTGGCAGGTCCCTGAGACCAACGGGGCCATCGTCCAGGGTGGCTATGGCCACAGCAGTGTGTATGACAGCTCCGGCAGGTGTGTTTACGTCCACGGGGGCTACAAGGCCCTGCCTGCCAACAAGTATGGCCTGGTGGACGAGCTGTATCGCTATGAGGTGCAGACCCGGACCTGGATGATCCTTAGAGAGAGTGGTCTGGCACGGTACCTCCACACTGCAGTGCTGAGCAATGGGGCTCtgctggtgtttggaggaaaCACCCACAATGACACGTCCCTCAGTAACGGAGCCAAGTGCTTCTCGGCTGACTTCCTGGCCTACGACATAGCTTGTGATGAATGGAAAGTCCTGCCCAGGCCAGATCTCCACCGTGATGTCAACCGCTTTGGCCACACCTCTGTTGTCAGCAATGGGTCCATGTATGTGTTTGGAGGCTTCTCTGGTGTGCTGCTGAATGACGTGCTGGTCTACACCCCTCCCAGCTGCCAGGCCTTCGATGAGGAGCAGCGCTGTGCCAACGCTGGCCCTGGTATCCGCTGTGTCTGGTTCAAGGACCACTGTGTCCCTTGGGACACCGGCCATGCCAACGGCAGCTTGCCCGCTCTCTTCTGCCCACCACGCACCAATAGTGAAGACGAGAGGTGCTTCAGGTTCTCTGACTGTGTCAGCTGCACTGCCAACACCAACGGCTGCCAGTGGTGTGAAGACAAGAAGTGCATCTCTGCTTCCAGCAACTGCACTGTGctgACCCTGGAACTTGCGCAGCAGCATAGAGGTCCTCTGTCCCTGGCCCCTCCCCCGTCCATGCTGTCTGAacaacagctctctgtgtggaaGCAAGGGGCAAAGAGGATGGGACATTCTGTAAAGAACTTTGTCAAATGCCATGTGAGAAATGAACATATCTGCAGCAAGCTGGTCAACTGTAAGAGCTGCTCCCTCAACCTCCACTGTCAATGGGAGCTTCAGCAACAGGAGTGCCATGCCATCCCtgCTCAGCTCTGTGGGGAAGGCTGGCATCATGTTGGGGAGGCTTGCCTCAGGATCAACTCCAGCAGGGAGAGCTATGACAATGCCCAGCACTACTGTAAGAACCTGGATGGGAACATAGCCTCCCTCACCACCGCCAAGCAGGTGGACTTTGTACTGGACGAGCTGCAGAAGTACCAGCTACAAGAGAAGaagTTAGCACCGTGGGTGGGCCTAAGGAAGATCAACATCTCGTACTGGGGCTGGGAGGACATGTCTCCCTTCACCAACTCCTCTCTGCAGTGGCTGCCCGGGGAGCCCAGCGACTCAGGCTTCTGTGCTTACCTGGAGAGGGTAGAGGTGGCAGGGCTCAAGGCCAACCCCTGCACCGCCACAACTGATGGACTCATCTGTGAAAAACCAGTCGTGAGCCCCAATCAGAGTGCCCGTCCGTGTAAGGTGCCCTGCTCCCTGCGCACCACCTGTGCCAACTGCACCAGCCAGGCCATGGAGTGTATGTGGTGCAGCAGCACCCAGCGCTGTGTGGACTCCAACGCCTACGTCATCTCCTTCCCCTACGGACAGTGTCTGGAGTGGCAGACTGGAGACTGTGTCTCTCAGAACTGTTCGGGCCTGAGGACGTGTGGCCAGTGTTTGGATCAGGCAGAATGTGGCTGGTGTGGAGACCCCACTAACACAGGGAAAGGCCAGTGTATGGAGGGTTCATACCGCGGGCCCATGAAGAGCCcctccagacagaccagagaaagggagagttcCCGAGACATGTTACTGGAGCCTGGTCTTTGCCCTAGAGATAAAGGGTTCGACTGGGCCTACATCCACTGCCCTGCCTGCCAGTGTAATGGCCACAGTACCTGTGTCAATGGCAGTGCTTGTGAGCAGTGCAGGAACTTGACCACTGGACTGCAGTGCCAGACCTGCATGCCTGGTTACCATGGAGACCCCACTAACGGTGGGAAGTGCCAGGCTTGCAAGTGCAACGGACATGCCAATCTATGTCAGGTGTCGACAGGGAAATGTTACTGTCAAACCAAGGGAATCAAGGGAGACCAGTGCCAGCTTTGCGACTCCGAGAACCGTTACCTTGGCAACCCCCTCAGAGGGACGTGCTACTaCAACCTGCTGATTGACTACCAGTTCACCTTCAGCCTTCTGCAGGAGGATGACCACCACTACACCGCCATCAACTTCATGGCCACCCCTGAACAGAGCAACAAGAACTTGGACATGTCGATCAATGCATCCAACAACTTCAACCTCAACATCACCTGGTCTATTGGATCAACAGCTGGCACCATCTCTGGTGAAGAGGTGCCCATTGTGTCCAAGACCAATatccaggaacacagagacagCTTCTCCTGTGAGAAGTTCAACTTCCGGGTCAACTCCAACATCACCTTCTATGTCTACGTCAGCAACTTCTCCTGGCCAATCAAGATCCAGATCGCCTTCTCCCAGCACaacagcatcatggacctggtgcaGTTTTTTGTCACCTTTTTCAGCTGTTTCCTGTCCCTGTTGCTGGTGGCAGCGGTGGTGTGGAAGGTCAAACAGACGTGCTGGGCAtccaggaggagagagCTCATGCGGGAGCGACAGCAGATGGCCAGCCGTCCCTTTGCCTCGGTTGCCGTGGCGCTGGATGTAAGCGTCGGCCAGGAACAGGAAGAGCTGCTGCAGGGGCAGGTGGAGGGTGTGCCCAAGCCTATAGCAGTGGAGCCATGTTGGGGGAGCAGGGCCGGCGTACTGACCGTCCTCTTGTGTCTGCCCAGACTGCCTTCAGGAATACCCCCACCTGGCCAGTCTGGCATTGCCATCGCCAGTGCCCTGATTGACACCTCGCAGCAGAAACCTGGAGACTTCAAAGATAAGTATCATGGCCTGAAGAACCGCAAACTGCACGCAGTAACACATCAGGGGACCTGTGTTTGAACCGCCTGACCAAAAGGGGAGCCTGAATGCACCTGAAAGGACCGCGAACGCTTCTGTTTTATGATGAGTTCTTGCTCTATTTTTATCAGTCTTTCAACAACCCGGCGTGCTGAAGTGAACCTGGTGATAACAGAATCCCTTTATTGAGATGTTGAGTGTCAGCAAGCAAAGTGTGCCTCATCCCCACGCCCTgtaatgttgtttttttccccagaGTGACTTGTCTGCTCTCTGGTTGGATCTCTGCCCAGCCCAGCTGGAGGGTTCTGGACATCCCATTGGCTCTCTGCCATGAAGTTTGTAGTCTGCACTTCCTCCCTGTGAACACATCTCCTTAAGAGTTCAGGAAGAGCAGGTCGCCACTGGAAGTTTGAATGTCATTGTGACATGAGTCTGAAAGAACAATGCCAAGGGCCTCTTGCTGGTGAGATGTGTGCTCATTTTGATACAAAGATAAAAGCTCTTTTAAGTTCAATCCAGGCTAGATGAACAGAGCAGCGTATGGGTCTAGATAGAATAGCTTGTGACTTGACTATATGGTTGCCTCACTCTGAGGTAATGTATCCTGTGCTGAGGATTCCTCCCATGACTTAGCCTACCAGCAGTACAGCATGTCATGGCCTAATGAAGAAGTCGGATGCAAAGAACAGCGGGAAAAAAGGAAGAAAACTGGTGTCAGTATTGAAACATGCCTGTGTTTGTTATGTTTAACTTCATTGTCAAAGAGCAATGGCATAACATTTAGAATGGCATTTAAATGCATGTCCTCTCCATGTGTCCAAAATTAttagcacccttgataaagatgagcaaaaaatactgCATAAAATTAATAATACATAATACTGTGCTATATTGTATGTATATATGAAATAAAGGAAAATTATATGATTTTATACCAATACAAATGCTCATAGAAAGAGTTTAAGTAATGAAAAACATTCTCAAAAAGATagggtcaaaattattggcagCCCTGTTTTGAATACCCTTTAATACctattataataataatcaaaataATATATGCCAAAGTTACTTAGtcgtgtgtgcatacattttcatatgggTAGTCCCAGCGGGAACACACACAATACTTCACCTTGCAAGGATAATATGAGATTGAAGAACGCATTGGGAGGTattttagaccattcctccatacagaatctttccagatccttatCTGCTGCCcttttcaattcaaaccacaggtgtTCGACCACAGATTTCCTGAGACAAATGACCATTGCAAAATGTTAATTTTGTGGTCAatgaaccatttctttgtggaattTGATGTGTACAtcgggttattgtcttgctggaagacccACTTCgagccaagtttcagcctcatGTCAGAGGCagccaggtttttggctaaaatgtcctggtactgggtaaagtttaTTATGCCATACTTAATAAGGGCCCGAGGACCAGTGGACGCAAAATAATCCCATAACATCAAAAATCCACCTTATTTTACAGTGggtatggggttattttctgcGTGTGCATCCTTCTTTCAACGCCAAATCTACCACTAGTGTGCGTGGCCacatcctatatatatatatatatatatactcgtTAAACGAAATATCTTTgcctgagcaattgtattagtgtaAAATAATAGAAGTAGAAACATTTTTTTTGCGtaaaatatagctcagtatttgtattttctgctcatctttatcaagggtggcaATCATTTTGGACCTGACCGTATGTCAAGATGTTTCAACATATTTCTCAGTATCCGTCAACACATATACTTTATACATATCAAGACTCCTTGATTTATTTAAGTATAGATTTAGAACACAAAATCATATTTTAATTGCTActccttttttctttttttgttgccaTATTTCATTGTGATTGTGTATGATTGTGTTTCTAAGGGAATGACAAGGGCATACAGTCATAAAACAAATAACAACCAATTGTAGCTCTAATGTTTtcttgtacagtatgttaataagACAAAAACCAAATGATTAATTTAACCTCCATATCCAGGTCGATTAATTTGTGTAACACACTAACTCAGCTTGGATCCTGCAACTCTATTCAGCCAATACCATTCTCAGTTCCAAAATGCTACATATGTTTCCTTTCCTACTCTCTACCTGGGATTTCTtcaaggaagggagggaggaagcatGCATGCATTTTTTTGGCATTTGGGCTGTTTGTTTTCTCTGTATGACTTTGAAGTTTGTTGTGTTTACACTTCTATCCGAAGCATCCTATGTTCTGTGTCACGCTTTGTCTTGTAAATCATTGTAAACAAACCCTAATAAATTATCACACTTTTAAATGTACATAGGAAATGTAGAAATGTGATAAATCTGATGTTTTCCGGTCAGGTGAACTACATATAATGTATTTTACACAGATCTGTTGAAATGTGTATGAATGAAGAGCAGCTCACCTCATTATTTTGTTCATTATGGGCATATTATGTAAAGTTACAATTAAACATTTTGATGCTTCTTCATACTGTGATTAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2122059 lncRNA downstream 107500 30044615 ~ 30046569 (-) True G1854157
TU2122055 lncRNA downstream 115792 30037615 ~ 30038277 (-) True G1854154
TU2122056 lncRNA downstream 118133 30035516 ~ 30035936 (-) True G1854155
TU2122052 lncRNA downstream 134849 30018457 ~ 30019220 (-) True G1854151
TU2122043 lncRNA downstream 149123 30004490 ~ 30004946 (-) True G1854142
TU2122473 lncRNA upstream 93421 30597458 ~ 30600004 (-) True G1854553
TU2122498 lncRNA upstream 121700 30625737 ~ 30647907 (-) True G1854574
TU2122622 lncRNA upstream 317404 30821441 ~ 30822330 (-) True G1854676
TU2122623 lncRNA upstream 318308 30822345 ~ 30822727 (-) True G1854677
TU2122583 lncRNA upstream 329359 30833396 ~ 30834680 (-) True LOC110502567
XM_036960861.1 mRNA downstream 407101 29740555 ~ 29746968 (-) True LOC110528531
XM_021580673.2 mRNA downstream 521309 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA downstream 521309 29121046 ~ 29632760 (-) True LOC110502554
XR_002470431.2 mRNA downstream 1172231 28969167 ~ 28981838 (-) False LOC110503060
XR_002470346.2 mRNA downstream 1221469 28920684 ~ 28932600 (-) False LOC110502553
XM_021580680.2 mRNA upstream 179420 30683457 ~ 30707617 (-) False LOC110502561
XM_021580682.2 mRNA upstream 179427 30683464 ~ 30707617 (-) False LOC110502561
XM_021580681.2 mRNA upstream 180087 30684124 ~ 30707617 (-) True LOC110502561
XM_021580683.2 mRNA upstream 203784 30707821 ~ 30716156 (-) False LOC110502562
XM_021580684.2 mRNA upstream 203784 30707821 ~ 30716157 (-) True LOC110502562
TU2118971 other downstream 1221524 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 2075818 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 4713682 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 6808298 23345091 ~ 23345771 (-) True LOC110502462
TU2111172 other downstream 6935799 23215485 ~ 23218270 (-) True LOC110502461
TU2122822 other upstream 647572 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 647572 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 713560 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 1475960 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 2011029 32515066 ~ 32515408 (-) True G1855821

Expression Profile