RNA id: XM_021580688.2


Basic Information

Item Value
RNA id XM_021580688.2
length 2363
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110502563
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 30666544 ~ 30682724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAACCACACTCCCACTGCTCTCACTTGACGGACTGTTCTACTTGTAGAACGTAATCGGTCACCATAGGAACCGGGACCGATTAGGTGTCAACCCTTTCGAAATTCATGAGTGCGCTTTTTCAGATTTTATGCAGCTACCAAAGCATGTTACGGAGAGGGATAATAACAATggactagcttgctagctagatcTCAACAAATGTATGGATCCTTAGACTTCACTTGTGCATTGTTGTACAATTTCAGGGCTAAACTTCCTCGCCTGAAGAACATCATAGGGTGTTATTAGCCAACATGGCTGAGGACAGCGAGTGGGTTGTGGAGAGCATCGCTGGATATTTGTCAAGTCCCGAATGGGTCATACCAGTTACGGACTTCATGGAAAGCAAATGTACAGtttttgacGACGAAGATGAGAATAAATTGACTTATACAGATATCCATCAGCAGTACAAGCATTTGGTGGAGAAGTTGTTAGAAACCTACATGGAAGAGGTTGGCATCAATGAGCAGCAGTTTTTGGAGGCATGCTCCTCTCCATTCGCCAAGTCCAAAACCTTACAGGCTGTATTCCATCCCGTCCTGGCCACAGATGACTTCCAGATGTTCAGGGCTCTCATGGTACAGAGGAATATGGAGCTGCAGCTCCAGGCGCTGCGTGTCATTAAAGAGAGAAATGGCGCTCTACCTGAGTGTCTCACAGATGGAGCAGATGTGATGAGTGAGCTGGAGAAGCAGGAGCTGAGGATTCTTCAGGAGGTGCTCAAGATGTCAAAGGATGAATATGACCAAGAGATGGCTCTGAGACTGCAGTCAGAGGAGGAGATTGGCTCCACGTCCAGAAGCTGCTCTGATAGGCCACTTCTAGAAGCAGCCAGCATCCAGACGACCGCCTCCACTCAACAGACAAACACCACCAACAAGGTGAACAGTTCATCTCAGAGGAAAGAGCCTGCTGTAGCTGGAGGTGGTGGGCAGATAAGTCCAGCCAAGACCAGCACATCTGCCCTTTCTAAGTTGCCATCAGAGCGGCACAGTGCAGAGCCAAGGATCCTGCCTGCAGTGAGGGTTCCAGTGAAGGGCACCGAGCCTCCGGCTGTCTCCAGGGAGAAGGGGAGCAGCAGCCAGGCTGCAGAGGGCTGGATAGAGGAGGCACGTAAGGAGGCTGGCATCTCCAAGCCATTCACAGAGTTGTCAGCAGAGCAGCAAGAGCAACTCCAGCAAAGGGCACTGTACCTGAGGCAGCAGAGGGACAAGCTTCAGGCCATGAAAAAAGAGCAGAGACCCAAACCAGCCACACCAGAAACCCCAGCACCCACTCCCAGCACACCGGACGATGGTCCCAAAATGAACGGGGGTGGTGCTAGTATAAATGAAGAGAGGGTCAATGCACCCCAGCCTGTGAGCTCTCCTTTGGGGGGACAGGAGAAGCAGCCCAAGGAGATCTCTGTCGAAGAAAAAAAGAAGTTGCAGAAAAGAAAACATCTGGCAGAAAAACTGAAAGAGGAAGTCATCAAAAAGTAAAACTGCAATATATCCCCCCCAGAGTGTAACTGTAGTCCAACTGGACCATCAATTCATTGGGAAGCTGAGATGGACTGTGCTTGTGAAGGGGCAACAGGAAATGTGCATTTGTAATGGAATGTAGTATTTCAATGGTTATTGATAGTCTTAAAGGGaatgacacattggtttccttaccgtATAAGCAGTCTATGGGCAAGGTGAcaacaatccatgctttggtttagtttccctggcactgaTTTGGAAATTATGCACAAACTATTCTAATATTGGTCCTATGACTTGAATATGATTTGTTCCACAAATGGTTAAATGTTAGCATGTGTTAATTGCTGTCATACCtggtccatagactgcttacagggtaaggaaacaaatttaattttgtaatttgggtgaactatccctttgtATAATATGtggtttaataaatatatttttaaaaaaaatgtaaattctGCCAGAGATCTTGTGTAATAAACCTACTGGGCTGCGACAGGTGGTTAGCATGAAAAGATGGAATTAACTATCCATGCTTGTAGATAAGATGCTCTGAGGTATACATCCTGTTAAGTGTGAATAGGCATTAGGAAATGATCAGCACACAAATATACAAACTTTACTGTATATGAAAAATGTAAGGGTTGTAGTATTAACACAATTCAGAAAAATAAGCAGGTTGTTCACACTTGTATTGCAGGTTCAAATcaatgtatataaaccctggattgctaaTGCTATGTATTGACCATTGAGAACTTTGAAGCCTCTGGTCGGCCGTATTGGCACTCCTCCATAGAATTTTGGTATTTCAATTAAATACATGTAATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2120802 lncRNA upstream 66462 30597435 ~ 30600086 (+) True G1853031
TU2120386 lncRNA upstream 699127 29967213 ~ 29967421 (+) True G1852632
TU2120385 lncRNA upstream 699416 29966859 ~ 29967132 (+) True G1852631
TU2120384 lncRNA upstream 701365 29964886 ~ 29965183 (+) True G1852630
TU2120382 lncRNA upstream 702103 29964221 ~ 29964445 (+) True G1852628
TU2120884 lncRNA downstream 26029 30708753 ~ 30709917 (+) True G1853097
TU2120887 lncRNA downstream 32362 30715086 ~ 30716130 (+) False G1853099
TU2120886 lncRNA downstream 32638 30715362 ~ 30716130 (+) True G1853099
TU2120945 lncRNA downstream 136289 30819013 ~ 30819225 (+) True G1853156
TU2120950 lncRNA downstream 142343 30825067 ~ 30825321 (+) True G1853161
XM_021580679.2 mRNA upstream 7215 30584896 ~ 30659333 (+) False LOC110502560
XM_036959637.1 mRNA upstream 521735 30043527 ~ 30144813 (+) False gfra1a
XM_021580082.2 mRNA upstream 521735 30043531 ~ 30144813 (+) False gfra1a
NM_001281400.3 mRNA upstream 524156 30043634 ~ 30142392 (+) True gfra1a
XM_021580675.2 mRNA upstream 670737 29993597 ~ 29995811 (+) True si:ch1073-126c3.2
XM_021580698.2 mRNA downstream 45664 30728388 ~ 30816688 (+) False LOC110502565
XM_036960150.1 mRNA downstream 45664 30728388 ~ 30816688 (+) False LOC110502565
XM_036960151.1 mRNA downstream 45664 30728388 ~ 30816688 (+) False LOC110502565
XM_036960154.1 mRNA downstream 45664 30728388 ~ 30816688 (+) False LOC110502565
XM_036960152.1 mRNA downstream 45665 30728389 ~ 30816688 (+) False LOC110502565
TU2120765 other upstream 13332 30547124 ~ 30653216 (+) True LOC110502560
TU2120344 other upstream 641502 30018490 ~ 30025046 (+) True G1852590
TU2119099 other upstream 1590550 29043361 ~ 29075998 (+) True G1851386
TU2118352 other upstream 2141311 28498023 ~ 28525237 (+) True LOC110502541
TU2117472 other upstream 2660334 28001875 ~ 28006214 (+) True LOC110502528
TU2120879 other downstream 122826 30805550 ~ 30806454 (+) True G1853092
TU2120954 other downstream 143861 30826585 ~ 30832443 (+) False G1853162
TU2121485 other downstream 937693 31620417 ~ 31624180 (+) True LOC110502584
TU2121728 other downstream 1185140 31867864 ~ 31869690 (+) True morn2
TU2123756 other downstream 1819645 32502369 ~ 32502657 (+) False LOC110502602

Expression Profile

XM_021580688.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_021580688.2 Expression in each Bioproject

Bar chart with 16 bars.
XM_021580688.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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