RNA id: XM_036960181.1


Basic Information

Item Value
RNA id XM_036960181.1
length 2457
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110502587
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31724575 ~ 31745791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcagggtttgtagtatatagccaatataccacggttccCTTTCTTTACtgatgtagtggagtaaaattaGACCTagtcaaaatataaatagtaaagtcaagtacagatacccccaaaaacgacttaagtagtacttcaaagtatttttacttagttactttaAAACACTGATTGGACATCAGCCACTGATGGTGTACTGCACTGGATCTTTCTTAGGACCCTGCGGATAACCATCAGGCAACGTGAACTTCCTAAAAGAAAGCAGCGAAACGGGGTTCTTTGACGTCAGCTACGTGTGACTATTTCAATTTAAACAGGACAAGATGGCGGAGGTGAGATTGAGCGGGCTGAGTAAGAGGAATCATTTCGAACAAAACCACAAAAGACACGTCTTTGACGAAGGTGCAGGTGGTGTGGAGGATGTTCCTCTGTCCCTGCCAGATCGGAGGCCTCATTCCAGGATAGCGCCTCGGGCAGAGGCTGACGGCGAAACAGACGAGTGGGAACAGGCCCCAGAGCTGAGTCATGTTAAGGAGCAGCCAATTGAAGAGGAGCCTGTGGTGGGGTTGGCCGAGAAGGCTCGGCCCATCCAGATAGTCCTGGCCCACGAGGACGACCACAAATTTGAGCTGGACACTGAGGCCTTGGAGAAGCTCCTACTGCaggaggatgtcagagacctcaatgtggtggtggtgtctgtCGCCGGGGCCTTCCGCAAGGGCAAGTCCTTCCTGCTGGACTTCATGCTCCGATACATGCTCAACCAGCAGCAGGAGCAGTCAGACTCGTGGGTGGGGGGTGATGATGATCCTCTGACAGGGTTCAGCTGGAGAGGAGGCTGTGAGAGGGAGACCACAGGGATCCAGGTCTGGAGTCAAGTGTTTGTTGTCAACAAGCCAGATGGGAGCAAGGTTGCTGTTCTGTTAGTGGACACACAGGGAGCCTTTGACAGCCAGTCCACCATAAAGGACTGTGCAACAGTTTTTGCCCTGAGCACCATGACCAGCTCTGTACAGGTGTATAACCTGTCTCAGAATATTCAGGAGGATGACCTTCAGCATCTTCAGCTCTTCACAGAATACGGCCGGCTTGCTTTGGAGGAAATCTATCTTAAACCCTTTCAGTCACTCATGTTCCTGATCCGAGACTGGAGCTATCCATACGAACACAACTATGGACTGGAGGGAGGGAACCGCTTTCTAGAGAAGAGACTGCAGGTGAAACAGAACCAGCACGAGGAGCTGCAGACCGTGAGGAAACATATCCACTCCTGCTTCTCCAACATCGGTTGCTTCCTACTGCCCCACCCTGGCCTCAAGGTGGCCACCAACCCCATGTTTGACGGAAGATTAAAAGACATTGATGGTGACTTCAAGGAGGCGCTGGGCAATCTGGTGCCCTTACTGCTGGCTCCTGAGAACCTGGTGGAGAAGGAGATTGGAGGGGTGAAAGTGACCTGCAGAGATCTAGTGGAGTATTTTAAGGCCTATATAAAGATTTATCAAGGGGAGGAGCTTCCTCATCCCAAGTCCATGTTACAGGCAACGGCTGAAGCCAACAACCTTACAGCAGTTGCTGGAGCAAAAGACATGTACAACAAAAGCATGGAGATGGTGTGTGGAGGGGACAAGCCCTACATCGCCCCTGCAGACCTGGAACGTTGCCACGAGGAGGTCAAGGAGTGCTCGTTGCGTCAGTTCCGCTCCGTGAAGAAGATGGGCGGAGAGGACTTCTGCAAGAAATACCAGGAGCAGCTGGCGGGTGAGCTGGATGAGGCCTACTCCAACTTCCACAAGCACAACGAGGGCAAGAACATCTTCTATGCCGCACGCACACCTGCAACGCTGTTTGTCGTCATGTTCGCCACCTACATCGTCTCAGGGCTGACCGGTTTCATCGGCATGAACACTATTGCCATGCTGGCCAACCTGGTCATGGGCGTGGCCCTCATGATGCTCTGCATGTGGGCCTATGTAAAATACTCAGGGGAGTTCAGAGATGTGGGCACCATCATAGACCTGTTGGCAGAGACACTCTGGGAACAGAGGACTTCCAGAAAGGTGCTTTCCAAACTCTTCGAGTCGACCAAGAGTCAAATCACATGGAGCTTTTTCCTACCAGCAGCACAGAGAAAGAGACTATCCTCAaacaacaatgacaagactgACTAACTAGCCTTTCTGGCTAGCTGCTTGGCTCTTTATTTCCAAATGCATCTGCATTCCGCTCTTGTCATTCCTTGTGGCCTATGGGGCTGGTCTTAATTATAGGGATGCTGTCTGCCTGGTTCACCCTACATGTAGAGCGCAGgtgttGAAGCCTCTGAGTGAGCAATATATGGAGGATAACGTTAGACAGACTGTGGTCAACTCCATCAGAGCCAGTCTGACAGAACAGGTCACGCAGCACGTCAAGtcacactgacccccccccccttctccctgcCATCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2123090 lncRNA downstream 1446 31723607 ~ 31724230 (-) True G1855107
TU2123201 lncRNA downstream 3810 31721659 ~ 31721866 (-) True G1855210
TU2123071 lncRNA downstream 232585 31492846 ~ 31493091 (-) True G1855089
TU2123067 lncRNA downstream 239423 31486004 ~ 31486253 (-) True G1855085
TU2123020 lncRNA downstream 288379 31432508 ~ 31437297 (-) True LOC110503101
TU2123204 lncRNA upstream 1033 31746824 ~ 31747044 (-) True G1855213
TU2123210 lncRNA upstream 11101 31756892 ~ 31757098 (-) True G1855219
TU2123213 lncRNA upstream 13117 31758908 ~ 31759569 (-) True G1855222
TU2123101 lncRNA upstream 81950 31827741 ~ 31828198 (-) True G1855118
TU2123263 lncRNA upstream 95999 31841790 ~ 31842778 (-) True G1855263
XM_021580729.2 mRNA downstream 82533 31638651 ~ 31643143 (-) True LOC110502585
XM_036960176.1 mRNA downstream 110532 31559814 ~ 31615144 (-) True LOC110502583
XM_036960177.1 mRNA downstream 110533 31559814 ~ 31615143 (-) False LOC110502583
XR_002470352.2 mRNA downstream 168226 31519954 ~ 31557450 (-) True LOC110502582
XM_036960415.1 mRNA downstream 288449 31423227 ~ 31437227 (-) False LOC110503101
XM_021580741.2 mRNA upstream 17033 31762824 ~ 31817656 (-) False LOC110502589
XM_021580742.2 mRNA upstream 17033 31762824 ~ 31817656 (-) True LOC110502589
XM_021580746.2 mRNA upstream 85589 31831380 ~ 31854368 (-) False galm
XM_021580748.2 mRNA upstream 85589 31831380 ~ 31854369 (-) True galm
LOC110503102 mRNA upstream 110141 31855932 ~ 31865936 (-) False LOC110503102
TU2122867 other downstream 507505 31217597 ~ 31218171 (-) True G1854905
TU2122822 other downstream 536080 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other downstream 555699 31151609 ~ 31169977 (-) True LOC110502574
TU2118971 other downstream 2793131 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 3647425 28074925 ~ 28078251 (-) True G1850441
TU2123334 other upstream 234206 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 769275 32515066 ~ 32515408 (-) True G1855821
TU2123854 other upstream 769958 32515749 ~ 32516281 (-) True G1855822
TU2124285 other upstream 891634 32637425 ~ 32646140 (-) False G1856217
TU2124286 other upstream 891634 32637425 ~ 32646140 (-) True G1856217

Expression Profile