RNA id: TU2123272


Basic Information

Item Value
RNA id TU2123272
length 222
lncRNA type sense_over
GC content 0.54
exon number 3
gene id LOC110503102
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31855932 ~ 31865936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTTTTGCACCACAGGAGTGCAGCTGGGGGGGACGCAGACCTCACAGGGATCTCTCGTATCATAGTGGATGAGtgacttCCTCCTGCTGGTGGAGAAGGATCTGATGGTCCAGAGCCCAGAACTGAAGTTCATCCTGATGAGTGCCACCCTGAAAGCTGACCGCTTCTCCCTGTACTACAACAACTGCAACACCAATCACATACCAGGACACACTTTCCC

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2123263 lncRNA downstream 21115 31841790 ~ 31842778 (-) True G1855263
TU2123101 lncRNA downstream 35695 31827741 ~ 31828198 (-) True G1855118
TU2123213 lncRNA downstream 104324 31758908 ~ 31759569 (-) True G1855222
TU2123210 lncRNA downstream 106795 31756892 ~ 31757098 (-) True G1855219
TU2123204 lncRNA downstream 116849 31746824 ~ 31747044 (-) True G1855213
TU2123283 lncRNA upstream 7954 31872361 ~ 31872770 (-) True G1855277
TU2123284 lncRNA upstream 9968 31874375 ~ 31874909 (-) True G1855278
TU2123285 lncRNA upstream 11657 31876064 ~ 31876302 (-) True G1855279
TU2123290 lncRNA upstream 19818 31884225 ~ 31884988 (-) True G1855284
TU2123291 lncRNA upstream 21090 31885497 ~ 31885798 (-) True G1855285
XM_021580748.2 mRNA downstream 9524 31831380 ~ 31854369 (-) True galm
XM_021580746.2 mRNA downstream 9525 31831380 ~ 31854368 (-) False galm
XM_021580741.2 mRNA downstream 46237 31762824 ~ 31817656 (-) False LOC110502589
XM_021580742.2 mRNA downstream 46237 31762824 ~ 31817656 (-) True LOC110502589
XM_036960181.1 mRNA downstream 118102 31725676 ~ 31745791 (-) False LOC110502587
XM_036960202.1 mRNA upstream 27572 31891979 ~ 31959434 (-) False LOC110502596
XM_036960201.1 mRNA upstream 27572 31891979 ~ 31959436 (-) False LOC110502596
XM_036960200.1 mRNA upstream 27572 31891979 ~ 31959438 (-) False LOC110502596
XM_036960197.1 mRNA upstream 27572 31891979 ~ 31959439 (-) False LOC110502596
XM_036960199.1 mRNA upstream 27572 31891979 ~ 31959440 (-) False LOC110502596
TU2122867 other downstream 645722 31217597 ~ 31218171 (-) True G1854905
TU2122822 other downstream 674297 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other downstream 693916 31151609 ~ 31169977 (-) True LOC110502574
TU2118971 other downstream 2931348 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 3785642 28074925 ~ 28078251 (-) True G1850441
TU2123334 other upstream 115590 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 650659 32515066 ~ 32515408 (-) True G1855821
TU2123854 other upstream 651342 32515749 ~ 32516281 (-) True G1855822
TU2124285 other upstream 773018 32637425 ~ 32646140 (-) False G1856217
TU2124286 other upstream 773018 32637425 ~ 32646140 (-) True G1856217

Expression Profile