RNA id: XM_036960188.1


Basic Information

Item Value
RNA id XM_036960188.1
length 5849
RNA type mRNA
GC content 0.45
exon number 35
gene id LOC110502596
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31891979 ~ 31959446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTCGCTCAGCCTGCTTTTTTTTATGGAGAATGTGAGCTGCATTTTTGCGCATGCCCATTGAGCATTGGAAGCCATGTTGAAGTTTCAGTGGCTGGCTGTGCTTTTCTGACGCTGTATGTTTTTAGGTTTGTTTTCTTCGATTTTTTTAGTATTGGTGACGTTCAACCATACCATTCGGAACCATAAATTGGAGTTCTAAAGATGAATTCCTGCGTCGACCTATCCAGGCGCAATCCGCAGGAGGATTTCGAGCTAATTCAGCGGATAGGAAGCGGGACATACGGAGATGTCTACAAGGCCCGTAATGTCAACACTGGGGAGTTGGCTGCCATTAAAGTCATTAAGCTGGAACCTGGTGAGGACTTTGAGGTGGTGCAGCAGGAGATCATCATGATGAAGGACTGCAAACACTCCAACATCGTGGCCTACTTCGGTAGCTATCTCCGGAGGGATAAATTATGGATCAGCATGGAGTACTGCGGAGGAGGATCTCTGCAGGATATTTATCATGtgACTGGGCCTCTGTCTGAGTCTCAGATTGCGTATATGTCACGGGAAACCCTCCAGGGTTTGTACTATCTCCACAACAAAGGCAAAATGCACAGAGACATTAAGGGAGCAAATATTCTATTGACAGACAACGGCTATGTGAAACTAGCTGACTTTGGTGTATCAGCACAGATCACTGCCACGCTGGCTAAGAGGAAGTCCTTCATTGGAACACCATACTGGATGGCTCCAGAGGTGGCAGCCGTGGAGAGGAAGGGGGGCTACAACCAGCTGTGTGATATCTGGGCCGTGGGCATCACAGCTATCGAGCTTGCCGAGCTGCAGCCTCCCATGTTCGACCTGCACCCTATGAGGGCCCTTTTCTTGATGACAAAGAGTAATTTCCAGCCACCCAAATTGAAAGACAAAGTGAAATGGGGAAATAATTTCCATCATTTTGTCAAATTGTCCCTGACAAAAAATCCCAAGAAGAGGCCAACAGCAGAGAAACTATTACAGCACCCGTTTGTGTCACAGCCTCTCAGTCGAACCCTGGCCATAGAACTGCTGGACAAATCCAACAACCCAGACCACACCACATACAACGACTTTGACGATGATGACCCAGAACCAGAGttTAAATATATGGGCCACTTCCTTCCCATCACCCCAGGTGCTCGGCGAGCACCTCGCTTTGCCATGCGCAAGAAGTCTCCAGTGTCTGTTCCCCATCGGATTCGCTCCACCAGCAGGAGCACCAGGGAAGGGAAGACGCTGTCTGAGATCAACTTTGGCCAGGTGAAGTTTGACCCTCCgctgaggaaggagacagagcCCCATCATGAGCCGCCTGACTCTGACCCGTTTTTGGACTGTGCAGAAGAGCTGTACTACACTGCGAGATCTAATCTGGACCTTCAACTGGAGTATGGACAGGAATCTCCAAGCCTAATGGGAGAAAACAAGAGTCTTCTCAAATCAGTGGAGGAGGAGCTTAAGCAGAGGGGTCACATGACACATTTAGAGAccgatgatgatggtggtgatgatggtgatgaaacTCAACACAAACACAGTACCATCATGAGGCCCAAAGTCCCACCCCCACTGCCCCCCAAGcccAAGTCCATCTGTCTGCCCCAGGAGAGCCCGTCCCagggagaggatgatggaggggGGACCATCAAGCGCTGCCCTGTACCCGAGAGCCCTGCCAGAACCACCTCCTCAAACGTACCCCCACGCCCTCCACCCCCACGCCTGCCCCCCCACAGACGCAGTAGCCTAGGTAATGGATTGAACTCTCACCAGAatggagagaaggacagtgctACAGAGAGGCAGTCCACCATGCCCCCTAGTGTCCCCATACGGAAAGACAAGAAGGACATTACGAAGCCTATCAGTAATGGCCTCCCACCCACACCCAAGGTCCATATGGGGGCCTGTTTCTCCAAGGTGTTCAACGGCTGCCCATTGAAAATCCACTGTGCCACGTCCTGGATCAACCCAGACACCAGAGACCAATATTTGATATTTGGTGCAGAGGAGGGAATCTACACTTTAAACCTGAACGAACTGCACGAGACGTCCATGGAGCAGCTCTTTCCCCGCCGGTGCACTTGGCTTTATGTTATGAACAACTGCCTGCTCTCTATATCTGGAAAAGCCTCTCAGCTCTACTCTCATAACGTAGCTGGTCTGTTCGAGCATGCCCGGCAAATGCAGAAGTTACCCATGGCCATTCCCACACACAAACTCCCAGACAAGATGATTCCACGGAAATTTGCCATATCCAATAAGATTCCAGACACAAAAGGGTGCCAAAAGTGCTGTGTGGTGAGGAATCCCTACACGGGTCACAAGTACCTGTGTGGCGCGTTCCAGTCCAGTGTGGTTCTGCTGGAGTGGGTGGAGCCCATGCAGAAGTTTATGCTCATCAAGAACATCGACTTCCCTCTGCCCTGTCCCCTGGAGGTGTTTGAGATGCTGGTGGTGCCGGATCAGCAGTACCCGCTCATCTGTGTGGCCGTCAGCAAGGGCATCGAGCTCAGCCAAGTGGTCCGCTTCGGCACGGTCAACCCCAACTCAACCTCCTCCTGGTTCACAGAGGCCGATACGCCCCAGACTTGTGTTATCCACGTCACCCAGTTGGAGAGGGACACCATCTTAGTTTGTCTGGACAGGTGTATAAAGATAGTGAACCTACAAGGAAGGTTGAAGTCCAGCAGGAAGTTGTCTGCTGAGCTGACGTTTAACTTCCAGATCGAGGCGATAGTGTGTCTCCAAGATAGCGTTCTGGCATTTTGGAGGCATGGCATGCAAGGGCGGAGTTTCAAAACCAATGAGATCACCCAGGAGATCTCTGATAACACGCGGATCTTCAGCCTGCTTGGATCTGACAGAAACTCTCAGCACGACAGTTCAGGGCAGGAGGGAGCCACCAATCTGCCCAGGTATACTCACTGCTCCCCGGGTCACTCCAGGCCTCACCTAGCCTACAAGCTTTCTGATCCATGGATGTCCCCTGTGGGGACCCTGGATTTCatcccatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggaggggggaacTGGGACTCTAATGTTCCAATTTTGTCTGAACCTATTGGTTTGGAGTTTGTGATGACATCTTTTTGTTTTTAACAcactttaaagtaactgtccgCTGTTTCCAGAATGTattaaatatgacctataattcattacaatatgagtgaaatagtcCTTCCAAAATGTTTTAATGGagtatgttaaaaagcagcttctctgtgttggaatggtgtgtgtgtaccccaACAGCAAAATAATGTGGGGGTATACCAGTCGTATAAAAATATTCATGCAGGTAGACCAcagattggccagctcatcctctgAGGAAATGGCAAGCATTTGACCTGTACTGTAGGTGTTTTTTTGTGGGGGTTTTCTCTCCAAGTTATGCTTTGGCACAAATGAGAACAGGATGATTCAACAACATTGTTTGGGTATCagttaacagaatatgaacttttaaaagttagattttcactggacagttactttaacacATCTCCCTCAATGTTCCCCCCTGCTGGGTTACTCTGGTAACACCACCTACTGGGAGTAAACCTATGATTGCGGAAAGGGTACTCTGGTGGCCAGTGCATGGAAGTGTCAGGATTTCTTATTCATAGAGTTGGAAGGATGCTTGGCAAGCTTACTTTTTTCTTGGGTCAGTGACTACTCTGTTACAGCACTTTGACCTTAACATGATGGACTTTGCCTATGGTGCTTGAGTAGTCTATTGGTAAGATTTGGGATTGTGCATGTTTTGGGGGGTGTTGGTGTCTGTTGGTGTGTGAaaatgcattttctgtttgtgaGGCTTACATTTGTAATCCTCCTGGTCCCCTCTGGGACATATATTTTCACAGTGTGAGTCTGAACTGAACCTGTGTTTCAGAGTGGTGGTGCTGGAAAGCAGGCCGACCGACAACCCCACAGCAGCCAGCAACCTCTACATCCTGGCTGGACACGAGAACAGCTACTGATCACACCACACAGCATCTTGGTTACAcaagacactacagacagactactGCTTTAGCTTCACAGGAGACTGATCCTTCAAGGGTCCACTTCCAACTTGCCTCTTACTTCCTTTTAACACCTATATTTATTGTGGCATGTAACAAAGAACTGGATGACTTCTATATGATTTCATTTTAGAATTAAGTGTTGCCACCACTGCTAGCATCTTAGCCCATACCACACAAGTGCTTAATTGACCTCTATttaattgtaaatataaatgtaGTATTTTTTTCGCAGAAAGGGACCCTGGCTACTCCGGGGTTGTAAACTAAAGACTGGTCATGTAGATAGGTGTTCTGTACCGGTATGGAGACTGTAAAGATTTAAAAGGGTGGTTCAGAGGGTCAGTTTGAGCACTAAAAATGACTTCTTGTTCTCTAATCATGTGACAAGGGACATGATTTGATCCCCTCTGAGGTTTGGCTAAGTCTGAGCAGCAAGGAAGTACCACTTACTGGTAATGTCATTCTGCACGCATCGTCATCCCAAATGTGGGAACTCCCTTTGTAGCTCGCTTTGAGAAATATCTAATGGGAGATCAACCATTTCATTCTTAGCTTCCATTTTATAACTCTATGAGATGAacatttcaaactgttttaattGCAGGCTTACTTCCCAGCTAAGTTGTATGCTTTTTTTAATACTGTGGGATCACTGGTGTTAAAATTTGCACAAAAAGGTATTTGAAGAAAAGAAAAGTGCCGTTGTATGTAACTGTATATGTGCTTGTAAACTTTAAGTATACATACATATGTTCTCACAAGCTGTGACACAGGGGTTGCATTAGCATAGGTAGACTTATTATGGAACACTCACTGAACATTACTGAAATACCATAATGAGACTGTAGAGGGAGAAATGTCAAACTTAAACGGACTCAAACGGTACTGTTTTGATCACCGTTTCATGTAATTCTCAATGGTAATATCGATCATATACACTATAGTCAAATGGACAAAACACATTCCTTACTGTTGGACTCAGTGAAGATGTAAAAAGAATAtgaatgttacattttttttgtaatgtAATGCCAAAATGTGTTCTCGATTTATGGCCAAAATTAGTGCGGTGTCTCTACCTCGTGCAATGTTGAACAAAAGGAAACGAGTTgtgtagaagaaaaaaaagtcagTAAAAACACTACAAGATTCATGTTGGTTTTAATTTACACAGTAGGAATGTGTAATGATTATGGACAAACTAACTTCCTTTCTGGCTCATTACCATTTTCATATTGCAATGCACATTATATGTATATAGTGTAAAATAAAATCTGTTGGTTTTACATACTGTATAATTGCCTATATTTTGTTTCAAATGTGTAACAGATTTATGAAACAAGTTAACACATTAAAAGAAGGAACTGAAgcttgtgtgtctgtttgtcgtGGAGAAATATTGATTGAAATGCAAAATAAGTTTCACATTGTCTAGTTTGCTAGCTTTGTAGATAAGTTGCACATTTTTCAAAGGGAAGAACTGTTAAGCAGCCACTGTGTGATCGTTTTCAGACATTCTTTGGTTATGACGAGGTATAACATATTGATTACAACAGACTTATTGTTTAATTTAAGTCTTGTCACAATTTACATTCTATTTTGATTTGGGGATACAGATTTTCTTGATGGCACATTTGTTTATGTTAATGAGTATACTgtatgcaaaatatattttcaccGTGGATATTGAAGAGATCTCAAATTGGAAACTACTAacttaaaaataaagaaacctatACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2123255 lncRNA downstream 446 31891067 ~ 31891533 (-) True G1855255
TU2123291 lncRNA downstream 6181 31885497 ~ 31885798 (-) True G1855285
TU2123290 lncRNA downstream 6991 31884225 ~ 31884988 (-) True G1855284
TU2123285 lncRNA downstream 15677 31876064 ~ 31876302 (-) True G1855279
TU2123284 lncRNA downstream 17070 31874375 ~ 31874909 (-) True G1855278
TU2123322 lncRNA upstream 1166 31960612 ~ 31960814 (-) True G1855316
TU2123333 lncRNA upstream 23383 31982829 ~ 31984556 (-) True LOC110502599
TU2123424 lncRNA upstream 158507 32117953 ~ 32138894 (-) True G1855405
TU2123542 lncRNA upstream 311072 32270518 ~ 32270744 (-) True G1855516
TU2123551 lncRNA upstream 316015 32275461 ~ 32275675 (-) True G1855525
LOC110503102 mRNA downstream 26043 31855932 ~ 31865936 (-) False LOC110503102
XM_021580748.2 mRNA downstream 37610 31831380 ~ 31854369 (-) True galm
XM_021580746.2 mRNA downstream 37611 31831380 ~ 31854368 (-) False galm
XM_021580741.2 mRNA downstream 74323 31762824 ~ 31817656 (-) False LOC110502589
XR_005039206.1 mRNA upstream 23359 31982805 ~ 31984548 (-) False LOC110502599
XR_002470355.2 mRNA upstream 23359 31982805 ~ 31984568 (-) False LOC110502599
XM_021580767.2 mRNA upstream 76773 32036219 ~ 32239296 (-) False LOC110502600
XM_021580769.2 mRNA upstream 76773 32036219 ~ 32239298 (-) True LOC110502600
XM_036960230.1 mRNA upstream 693889 32653335 ~ 32679030 (-) False LOC110502604
TU2122867 other downstream 673808 31217597 ~ 31218171 (-) True G1854905
TU2122822 other downstream 702383 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other downstream 722002 31151609 ~ 31169977 (-) True LOC110502574
TU2118971 other downstream 2959434 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 3813728 28074925 ~ 28078251 (-) True G1850441
TU2123334 other upstream 20551 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 555620 32515066 ~ 32515408 (-) True G1855821
TU2123854 other upstream 556303 32515749 ~ 32516281 (-) True G1855822
TU2124285 other upstream 677979 32637425 ~ 32646140 (-) False G1856217
TU2124286 other upstream 677979 32637425 ~ 32646140 (-) True G1856217