RNA id: TCONS_00053080


Basic Information

Item Value
RNA id TCONS_00053080
length 284
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_026648
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39561784 ~ 39563301 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATTTTCATGTCAGatttttcatttcttcaattgCTCTGATTTGTTGGAGATGCtgtaatgtttcccaaatgatgcaaaCGTTACAGAACGATGAGAGTTTTAGCGTAAAACATGCTCAAGTATCACATGGAGTTTGTAAGGCATCTTTTATAGTAAAGTGGGTGGGCATCTTCCTTCATCCCTCCACTTTTCTATTTAAACTTGATCTCGAAGCAGATGCAGTTGATGGAGTCGCACTCTGGCGGTTGACAAGTACAGGCGCAATCCATCATGgcacaatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051904 lncRNA downstream 106881 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 448237 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00053079 lncRNA downstream 586086 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00053078 lncRNA downstream 586170 38971435 ~ 38975614 (-) False XLOC_026636
TCONS_00052479 lncRNA downstream 586429 38971435 ~ 38975355 (-) False XLOC_026636
TCONS_00051912 lncRNA upstream 129057 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00051913 lncRNA upstream 382564 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00053081 lncRNA upstream 616835 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051928 lncRNA upstream 688115 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 832762 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051905 mRNA downstream 73145 39472342 ~ 39488639 (-) False XLOC_026647
TCONS_00051906 mRNA downstream 73302 39473188 ~ 39488482 (-) True XLOC_026647
TCONS_00051903 mRNA downstream 198719 39313094 ~ 39363065 (-) True XLOC_026645
TCONS_00051902 mRNA downstream 256493 39260082 ~ 39305291 (-) True XLOC_026644
TCONS_00051901 mRNA downstream 301865 39238860 ~ 39259919 (-) True XLOC_026643
TCONS_00051907 mRNA upstream 56270 39619571 ~ 39627412 (-) True XLOC_026649
TCONS_00051908 mRNA upstream 67629 39630930 ~ 39648021 (-) True XLOC_026650
TCONS_00051910 mRNA upstream 128224 39691525 ~ 39696066 (-) False XLOC_026652
TCONS_00051911 mRNA upstream 128932 39692233 ~ 39695856 (-) False XLOC_026652
TCONS_00051915 mRNA upstream 407054 39970355 ~ 40051425 (-) False XLOC_026655
TCONS_00051900 other downstream 302107 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051892 other downstream 643067 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051881 other downstream 1787984 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 1861833 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051859 other downstream 2485971 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051909 other upstream 86144 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051914 other upstream 394057 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 525384 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051924 other upstream 590993 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051938 other upstream 963578 40526879 ~ 40529778 (-) False XLOC_026667

Expression Profile

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