RNA id: XM_036960240.1


Basic Information

Item Value
RNA id XM_036960240.1
length 2068
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110503103
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 33038670 ~ 33141219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtgcagggtatcCCTTGATAATGACTCTCAGTTtcatagggttagggttcccacacggctgtatttccatgttacagcgcTGGTTTACAGAAAACGGACGGAAGAAAGGCTGGACTACCTTTGATGTTGACACCACCAAGGACCCCTGTCAGAAGGTGAAGTGTAGCCGACACAAGGTGTGTATCGCCCAGGGATACCAAAGGGCTGTGTGTGTCAACCGCAAAAAGCTTGAGCACAGaCTGAAGCAGCCTTCCCTGAGGTCTCCTGAGGGAGGATGCCGGCCctgccccatctcctcctctgttcctgtgTGTGGCTCTGACGGACACAACTACGCGTCACAGtgtaaACTGGAGCAGCAGGGGTGCCTCACAGGGAAGGAGCTGACTATGAAGTGTTCAGGTCTTTGTCCCTGTCCAACCACCGCGCCCATCACAGAGACAGAGGTCAAGCATGagagTTGTACAGGGCAGGACCTCTCTGATCTGGGGGAGAGGCTGAGGGACTGGTTCCAGCTGCTGCAGGGCAATGCCAAGCTGAACAACAACAGCAAGACTGGAGGCAGCAACCCAGCAGTGGCTAACACTGGATCAGTCATGGACAGGAACGTGGTGGCCAGCTGTAAGGACTCTATAGGTTGGATGTTCTCTAAGCTGGACACCAACAGTGATCTGTATCTGGACCAGGCCGAGCTGGCAGCCATTAACCTGGACAAGTATGAGGTCTGCATCCGACCCTTCTTCAACTCCTGTGACTCCTACAGGGATGGGAAGGTTTCTACAGCCGAGTGGTGCCTCTGCTTCTGGAGACAGAAGCCCCCCTGCCTGGCTGAGCTGGAGAGGATCCAAGTCCAGGAGGGAGGCAAGAAGAAACTGGgCCTGTTCATCCCTAGCTGTGATGAGGATGGATACTATAGAAAGCTACAGTGTGATCAGGCCAGGGGAGAGTGCTGGTGTGTCGACCAACACGGTGGGGAACTAGCCAGCTCCAGAATCCATGGCAACCCTGACTGTGatGAGGCGCTGACATATTCAGGTGATTTTGGCAGTGGGGTAGGatgggaggatgaggaagagaaagaagcggaggagaatgaagaggaagaggaagaagaggcgGATGACGGAGGATATATTTGGTAGAGGTGAAGAAATAATGGAGTCTAGCTGGTCCAACATTACTACCGGAGCATCTCAACTTCTTTTGCTTCTctgtctcttacacacacacacacacacacacacacacacacacacaaataatgttCCTGAAAACACACTCTGAACAACACTGAATCAGTCCTGGACTAAGGGAGGGGGTTGGAGGGACAGATGGGGGGTGGGTGTAGTTGCGTGACAATGTGTGATATCAATAGCTAGCAACTGTGGTCTGACGAGTCAGGAGATGTGTCCTAAATACCTGGGAATATCTTGGCTCTTTTTTCTGTTGTATGTACAAGACAACTTTCTCATGGAGCAGTTTTTAGCAgcttaaaatgttttattaaaggCAGGAAGCAACTGGAGGTTATGTGCTCATGTTAGGAACTGGAGACGCAATTGGGTGCATCTCAGTAGTCAAAAGTGGCATCCTCCCCTTGCTTCCGTTCCTTCATTTCCTCCTTTCTCTGCACTGATGTGAACAAACTGGACAGGCAATTATAGTCAGGCTTTCACCTTACTGTTTTCACCAACCCGGGGCTTTCAGTTCAGGGCAGATGGGgaggagacaaagagaggagtCCACTTTAGACTAATTGCATATTCCTATTGCATCCTTTGACTTTCCCCCATTCCATCCCGTATGCTTCACCTCATATGACAGTAGTGCTCTGTCTCATCAAGTCTAATAGAATAAAGTTTCTCACGCTACACTCCTAAATGTGAATAAACTGTGTATCTGAAGAcagccattattattattagtccTGTATTGCTAATGCCTTGAGAGACTGGCAGACTGTACTGCTTGATTGACAAGTGTCCATTGCATTATCTGCAGATCAACATTGTGTTTAATAATAAAATTAATTGGTTCTATGTGGCCCAACAGGGCCACCATATTC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2124463 lncRNA downstream 7244 33031225 ~ 33031426 (-) True G1856383
TU2124453 lncRNA downstream 17210 33019516 ~ 33021460 (-) True G1856373
TU2124450 lncRNA downstream 21692 33016695 ~ 33016978 (-) True G1856370
TU2124237 lncRNA downstream 62826 32969534 ~ 32975844 (-) True LOC110502608
TU2124408 lncRNA downstream 92305 32946080 ~ 32946365 (-) True G1856330
TU2124820 lncRNA upstream 172770 33313989 ~ 33314395 (-) True G1856699
TU2124831 lncRNA upstream 192009 33333228 ~ 33333526 (-) True G1856710
TU2124836 lncRNA upstream 195100 33336319 ~ 33336598 (-) True G1856715
TU2124840 lncRNA upstream 198123 33339342 ~ 33339655 (-) True G1856719
TU2125063 lncRNA upstream 300753 33441972 ~ 33442604 (-) True hhat
XM_021580782.2 mRNA downstream 62795 32969517 ~ 32975875 (-) False LOC110502608
XM_021580778.2 mRNA downstream 94382 32937921 ~ 32944288 (-) False LOC110502606
XM_021580793.2 mRNA upstream 12654 33153873 ~ 33166327 (-) True dnajb12a
XM_036960250.1 mRNA upstream 145622 33286841 ~ 33330270 (-) False LOC110502617
XM_036960251.1 mRNA upstream 145622 33286841 ~ 33330270 (-) False LOC110502617
XM_036960252.1 mRNA upstream 145622 33286841 ~ 33330270 (-) False LOC110502617
XR_005039170.1 mRNA upstream 148646 33289865 ~ 33330278 (-) True LOC110502617
TU2124285 other downstream 392530 32637425 ~ 32646140 (-) False G1856217
TU2124286 other downstream 392530 32637425 ~ 32646140 (-) True G1856217
TU2123854 other downstream 522389 32515749 ~ 32516281 (-) True G1855822
TU2123853 other downstream 523262 32515066 ~ 32515408 (-) True G1855821
TU2123334 other downstream 1057337 31979997 ~ 31981333 (-) True G1855326
TU2125229 other upstream 454939 33596158 ~ 33601841 (-) True LOC110502621
TU2126422 other upstream 1035838 34177057 ~ 34187870 (-) False kcnma1a
TU2126826 other upstream 1679557 34820776 ~ 34821565 (-) True G1858519
TU2126883 other upstream 1698681 34839900 ~ 34841662 (-) True G1858575
TU2126950 other upstream 1795470 34936689 ~ 34968861 (-) True G1858636

Expression Profile