RNA id: TCONS_00004945


Basic Information

Item Value
RNA id TCONS_00004945
length 2062
RNA type mRNA
GC content 0.44
exon number 18
gene id XLOC_002662
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15321522 ~ 15340450 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAACATTAACTACGACATTTTTCAGATGCCGTAAAGTTGTTTGTCTGCACACATGGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAGTCAGGTGGAGAAGGAGGACCACAGAAGTTCAACAGAAAGCCGACAGATGGAAAATTTGCCAAGAAGAGAAAATTTCCTGGAGACAGAATCAAACAAGAGGAAGGTGATGAGCGCAAAAAACCTAAATGGGATgagtttaaacaaaaaaagaaagaactgAAGCTGAATCGTCAGCAGACTGATAGAAAAGAGAGCTACCAGATCGTAAGCAGAGCAAAGCAAGTGTGGGAGATGGTAAGACGGAAAGACTGTGATAAGCAAAAAAGGACCAAACTGATGAAAGAGCTGCAGGATCTTGTAAAAGGCAAAATTAAAACGATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAGAACACATTGTGGAGTTGAGTAAATCAAAATATGCCAGAAACATTGTAAAGAAGTTCCTAATGTATGGGAGTAAAGAGCAGGTAGGTGAAGTGATGTTGGCTTTTAAAGGGAAAGTCAGGCAGATGCTCAGACACTCGGAGGCGTCTTCAGTTGTGGAATACGCTTATAATGATAAAGCCATCCTCTCTCAGAGACTCATGCTCACTGAGGAGCTCTACGGAAACACGTTCACCGTCTTAAAGTCATCAGTTTGTCCTACGTTAGAGAAAGTTCTTGAAGCAAATCCAGGGAAATTGGAGAGCATCTTGGATGAAATGAAGCAGATCCTTACACCCATGGCACAGAAAGAGGCTGTCATTAAACATTCATTGGTTCACAAAGTTTTCCTGGACTTCTTTGAGCACGCTCCGGACAAACAGAGAACGGAGATGATTGAGTCGATCAGAGAGGCCGTCGTGTACATGGCACACACACACGATGGAGCCAGAGTCACCATGCACTGTTTATGGCACGGCACAACTAAGGACCGAAAGGTTATAGTAAAAACGATGAAATCGTATATTGCAAAGTTTGCCATGGGTGAATATGCTCATCTTGTACTTTTGGCTGCATTCGATTGCATTGATGACACCAAGCTGGTTAAACAAATTATTATCTCAGAAATGGTTAGTTCCTTATCTGAAATAATCAGCAATAAACACGGTAAAAAGGTGCTGCTTTACCTGCTGAGTCCTAGAGACCCTGCTCACCTCTTACCTGAAATCATTCAAGTGCTGGAGAAAGGGGATGGCAATGCGCACAGTAAGAAGGATGTGCTGATCAGGAGAAAGGAGCTGCTGGAGGCCGCGTCTCcttctctgctgaatcatctgtgtgAAAACGCTCAGTCTATGGTCATGGATAAATCCTGCTGTGTGGTGGTGAGCGACATACTGGGCTCTGCTGTTGGAGATCTCAGACCTGCTATGGAGgcagtggcagctctggcagATGGACCCCTTATACCAGGTGGAAAGGATGGACAGCTGCATATGGCTGAACACCCCGCTGGTCATCTGGTGCTGAAATGGTTGATCGAGCAGGACACCAAGATGAAGGACACAGAGAGAGAGGAGCGTTTTTCCAGGATTCTTCTGGAGAAGGTTGGGTTGGagaacctcaagacatgggcttCGGTCAACCGTGGTGCCATTATTCTTTGTTGTCTTCTCCAGAGCGCAGATGAAAGTGTTGCTGAAGAAGTGAAAGCTATGCTGAAATCCAGCATTCCTGAGCTACAGCGGCTCCAGAACTCAAAAGGAATTGAGGTTCTGCTTGAAAAACTTGCATAAAAAAGTTCGATCTATCAAtgatttttctttgttttcttcagtttttttaaaattgtgcatTTCTATGATGTTGTATGTAAATACAAATTACACACAATGAGACCTGGA

Function

GO: NA

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDART00000154037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004943 lncRNA downstream 235225 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 237475 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00005751 lncRNA downstream 237626 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00006013 lncRNA downstream 278774 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 286562 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004955 lncRNA upstream 282486 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00005752 lncRNA upstream 376327 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004964 lncRNA upstream 596654 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 596654 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 596654 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00004944 mRNA downstream 192751 15120711 ~ 15128771 (-) True XLOC_002661
TCONS_00004940 mRNA downstream 267908 15050469 ~ 15053614 (-) False XLOC_002659
TCONS_00004941 mRNA downstream 268015 15052698 ~ 15053507 (-) True XLOC_002659
TCONS_00004938 mRNA downstream 272741 15046837 ~ 15048781 (-) False XLOC_002658
TCONS_00004939 mRNA downstream 272741 15047909 ~ 15048781 (-) True XLOC_002658
TCONS_00004950 mRNA upstream 41560 15381972 ~ 15405564 (-) True XLOC_002663
TCONS_00004952 mRNA upstream 277329 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004951 mRNA upstream 277329 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004953 mRNA upstream 277686 15618098 ~ 15644940 (-) False XLOC_002664
TCONS_00004956 mRNA upstream 296778 15637190 ~ 15644904 (-) True XLOC_002664
TCONS_00004937 other downstream 381176 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 589123 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 833368 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1389826 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 1709274 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004954 other upstream 277804 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 1737021 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1763886 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1805407 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 2001953 17342365 ~ 17342481 (-) True XLOC_002684

Expression Profile

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