RNA id: XM_036960250.1


Basic Information

Item Value
RNA id XM_036960250.1
length 8056
RNA type mRNA
GC content 0.54
exon number 33
gene id LOC110502617
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 33286841 ~ 33330278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCAGCTCGTTGTCCTGCCAAGTTCTGTAAAGGGAGCCCTGCCCGGTGAGATCCCTATTTCTGTGGctccccccttttcccctcttcccagatccctctcttttcctctctccctctcccctgatcactcttttcctctcctcccaaTCCCCCTCTTTTCTTATAGCCTACTGTGGATAGAGACGGAACAGGGACACATCTGGTCCGCTACAACTGAATCTGGAGAGACAAACACCAACCTTTCACACAAAGCTAACTTGGGTTCTCCTGCTGTCCCCTGCAGATTGACGAGGGATGTGTCTGCCTGGCCGGCACGGCAGCAAGGTCAATCTCTGAGTGTGCACAGAGGGACGCATCTCCCGGACAGCGTTGACTCTCCTGGTGTTCACAGCTGTTGTGGACTCCACCTGCACCCACCTCTCGCTCTGACGTCTCTGAATACCAACAAGGAGGAAGACACAGAAAGGCAGGTGGGCCGGCATTATGTTGGAGGAATTCTGTACCAGCAACACAGACGGGACAGAGGCGGGTGCCGATAAGATAGATCATGGGATTGTAAGGCCCAGGAGCCCACATGGGACCCAGCGGAGAGTTAAAGTCCAACTACACTCTGATGATACAGACGCACCGCCACCGCCATTCCAACCGGATAAACACTCCAGCAATGGCTGCCGTTCAGTGGAGTCTCTGGATGCTGGATTGAGACAaagagtgtgtgtgactgtgcagCCTACCAGTAAACCTTCAGGCTGCTGCTGTGGCGTAAGCCGCAGGAAGGGCCTTGGGCCTTGTGTACTGTGCTGCAGCCAAAGTAAACCGATCACAGACGTCTGCAATGACTCTGACAGTAACACTCCAGTCCAGAGAGCAGGGATCTCACCTCAGACGTACACAGCGGATAAAACAGGATATGTTACACAGAGCATTGtgggtactgtagtacatcatggtacagATGTACGTAGGAGTGTCAAGGAGTTGGAGTCGCAGGAGTTGTCTCCTCTGTGCAATACAAGGACACTGCCAGGTGAGGGCAAGAACTGGTTTCAGAGCTTGCTCTACTCTGGTACCTCCTTAGGTGATAGAGGCAAGGAGGCTGTAGGGGGCAAAGTGTCAGGCTCAGCATCCTCAGTCCCATCTTCCCCCACAAGAGTCGCTACGGGCAGCTTTGCCTTCTGTCTCGTAGAGGAGATGACGTCATCAACAGTCGCTGACACCAGCTGTACCCACGGACTCAGAGATGGGCACATCAGCCCAGGGGGCAAGGCCAAAAAGCAAAGGTGCTCTACACTGGCACTCCTTCCCACCAGCCCTCCCAAAAGCCCCACAGCTTTGAAGATGGACTCAGACAATGGGTTAGGATTTGACTGCGAGACTGAGGATAGCTTTGTATATAATAAGAGGGAGCGTTCGACGGTCCTGGTCCGTAGGTTCTTGAGGGATAACCAGAGGGTGAAGAAGTCTGTGTGTACAGGGACTAGGGCAATCATCAGGACATTACCCTCGTGGAGGATCAGTGAGGAAGCGTGGGACGCTGTCTGCAGAAGGGACCGTTTCTCTGGGCCTAGGGAATACAGTCGCTTGAGTGGATACAGTTCAACCTCTCAGAGTCTACATCTGCAAGCATGTAAACCTCACCTTGGAAATAAAGGAGACATGTTTTTTGAGGCATGCCATGCTCTGAGTGCTGAAGTAAGGGTGGCCAGATCCGGAGAGCTACTCCTTTCTTCCAGGAAGCTGCTGTTGTCTGCCGAGAGGAGGGATCTGTGTCGTAGGAGGGCCACATTGCCatggccaggaggaggaggggcgtcTAGCTACCGAGCAACCCTACAGAGGACTGACGTTTCTGCCTACATTTCAGGGACCCTCCTGGAAGTGGTTCTGTCCATCGGCAACAGGGGAGAAAACGACTCTCCTCCCTGTATCACAACAAGTCCATTGGGCTGGGCTGTCCTGAAAGagCGCCAGCTGCACTCCCCCATGGCGGGGTCCAGCGTGGTGCCGGCAGCTCCGCTGGCAGAGGTCAACAAGGAGCTGTCTGACCTCTGTCCCCTGGTCAGTTTCCCGGAGGAGATGGCCTACGTCCTCATGGAGCAGGAGCTGCATCTATACAGCCGGATCTTACCCCTGGACTACCTCTGTTTCCTCACCCTCGACCTGGGGGGCCCTGATCAGCCACAGCCCCAGGGGCAGGCACACCAACCTGGACAACCCCATCTTATGGCTGGCTGCAGACGGCCCCACAATGCTGTAGAGGACCTGGTCACAAGATTCAATGAGGTGAGCTCCTGGGTGACGTGGATGATTATGACAGCCGGTTctatggaggagaagagagaggtgttCTCATGTCTGGTCCATGTGGCCAGGTGCTGTTGGAACATGGGAAACTATAACACCGTCATGGAGTTCCTGGCTGGACTCAGGTCTCGCAAGGTGCTGAAGATGTGGCAGTTCATGGAGCAGTCGAACATCGAGACAATGCGTGCTCTGAAGGATGCTATGGCGCACCACGAGACATCTGCAGAGTACAGGAAGGTGGTCTCGCGTGCCCTACACATCCCGGGCTGCAGGGTAGTGCCCTTCTGTGGGGTCTTTCTGAGAGAGCTAGGGGAGGCCCTGGATGGAGCAGCTAGCCTGATCAGCCTCAGACCACGCCTCAGCTCACAGGACTCTGTGGAGTTTCTCTCTGACTACAACGGACAGGACAACTTCTTGCAACGGGCGGGGCCAGATGGGCTCAACCAACAAGAGAAGGAAGGAACTGTCAATAACATCCTACAGACCATCCGTAGCTGCAACCGCAGTATGGAGTCTGAGGATGGGGAGGAGTCCGGAGGGGCTAGTGATGGGAGCATCCCTGGTTCACGTAAAAACTCCTTCATGGACGGCTACCGCAACCAGTTCACCGTGGGCGATCTCTCCGACTCTGCGGGTGACCCATCTGACCTATCACAGGGCAAAGACCCAGACCTCCAGGGTAGTGGTGAGAGGACTCAGAAGGCCTTTGCCCATGGTACGGAGCTCATCCCCTGGTACATCCTTACCCTCCACCCCCACGTGCAGCACTTCCTCCAGCAGGGCGCTACTGTGATCCATTATGATCAGGACTCCCACCTCACCGCCCGCTGCCTGCTCAGACTCCAACCTGACAATTGTGTCCTCACCTGGGCCAAGCTCCACAGTGGCGGTGGGGGCCTCCCTGGTTCTAGCTCTGTCCCTGAGTCATCCAAGCTTCGGAGCCCCACCGGGTCAGGGGCTGGTGGTCAGACCCTCCCCCACTGCAGGCCTCAGTACTGCGGGCAGTCCATACTGAAAGGCCTGGCGGATGGATTCCTGGATCTCTCCGTGGCTAAAGCTGTCTTCATGGGCCATCCAGGGGCTGACATTCAGGCGGTATGCCTGCAGAACAAGCTCTCATGTGGGTTGAGCCTGGAGGAGTGTGGGGTGACTCTGCTCTATGGGCTCCATACAACAGACAATAGGTTATTACACTTTGTGGCCCCCAGAAACACAGCTAGGATGGTGTATTCTGGGCTGCAGGCCCTGTTAGCTGCTCACAGGAGGATGAGGAGGTTCCCTGATCAAAGGCTGCAGTGGCTCCGTAGGAAGTACATCAACCTCTATCAGGAGGATGGCAGGTACGAGGGTCCGACACTAGCCCAGGCCATCGAGCTGTTTGGAGGCAGGAGATGGAGTGTGGGTGCTGGTAGCATGGAGAAGTCTGGAGCTCAGAAGAGCAGCCATCTCACTGTGACCTCCAATCAGAAGACTGGTAGCTCTAATAAAAAGAAAAAGAAGGCTGTGACTAGGGGGGACAGTGGGGATGCCACAGATGATGAGATGGTGTCACATAAGGTGAAGAGTGGTTGGGATATCTTAGTACGGAGTGCACCGGACCCAACAGACAACATGGACCAAGACCAAGATGACAACAGCTCCTATGGTTTCCCagggcctctctccccctccagcaGTAGATCCATGGTCATTAGcacatcttcctcctccatctcctcctcatcctcagccTCCAATCAGAAGGCTCAACCGGGTAATAGGCCCAATCAGACACTACCTAGCCGGGGTAAGAGCCAATCAAAGAGCTTCCAGAACCTCATGGTATCAGATGGCACCATGAGCTTTACTGAGTTTATTGAGCTCTTTAAGTCCTTCAGTATCCGGAGTCGTAAGGACTTGAAAGATGTGTTTGATGCCCATGCTGTGCCCTGTGGTCAGTCTGCCTCTGAGCCTGCTCCTCTCTACACTCACCTCAGCATCGACGACACAGTCACAGAACTGCAGCCAGACCTGGACCTTCTGACACGTAACAGCCTGGATCTTGGCCTTTCCATCCGGATCAAGCGACACATGTCAGACAATCAGAAGCATATTTCAGACGCCATAGCTGCAGCCAGCATCGTGACCAACAGTACTGGCGTGGAGAGTGTCTCGCTGGGAGCTCTGGGCATGACCATCATGCACCTCAATGACTTCCTGGTCAACTGTCAGGGAGAGAACCACTCGCATGATGAAGTCCTAAGAAttatccagAAATTTGAACCGTCTGCCAGTTTGCGTCagattggctggatgtcctttgagggATTTGCACGGTATCTGATGGACAAGGACAACTCTGCTTCCAAACTGGAGGAGTCTCAGCTGAATGTGTTAGAGCTCCAGTACCCTCTGTCTTACTACTACATCGCTACATCACACAACACCTACCTGACTGCCCACCAACTCAAGGGAGAGTCATCTGTGGAGCTGTACAGCCAGGTGCTCCTGCAGGGATGCAGGAGTGTTGAACTGGACTGTTGGGATGGAGACGATGGCATACCAATCATCTATCATGGACACACCCTCACTACCCGCATACCCTTCAAGGATGTGGTGGAAGCAGTGAACCGATCAGCCTTTGTGACCTCTGACCTGCCTGTGATGCTGTCCATAGAGAATCACTGCTCCCTGCCGCAGCAACGAAAGATGGCCAACATCTTCAAGACTGTGTTTGGGGATAAGCTGGTGACAAAGTTCCTGTTTGAGAGTGATTTCTCGGACGACCCGCTGTTGCCATCACCATGGCAACTGAGGGGGAAAATCCTCCTCAAGAACAAGAAGCTGAAAGCTCACCAGACGCCGGTGGACATCCTCAAACAGAAAGCTCACCAGTTGGCACAGATGCATGCTCAGGCCAGTAGTGTGATGCCTCCTCCCTTCCCAACCATCAAcaatgaggaagaagaggaagaagagtaTGAGGATGAATATGACTATGAGTACGAATCACTATCTGATGCTGACGTCCCCACTTTATCTCCTGCTTCTTATGTCCCAGAAGATAATATCCTGGAGGATAGACCGGAGGGAAAGTCTTCATCGGGGGAGAAGTTACAGACTGAACACAGTGACGAAGTCCCCAAGAAGATGAAGAAATGTGAGAGTGCTACTCACAACAAAGGAAAGgtatttgGCAAGGAGTTGGAGGAAGAATTCAAGCTGCCTCGAAGCAAGAAGGAAGGACGACAGATAGCCCAGGAGCTCTCAGATCTGGTGATCTACTGTCAAGCTGTCAAATTCCCAGGTCTATCCACCCCTACTCCATCTGATACTCccagggagagaaaagagagaaaagaagtTCTTTCTTCTAGAGGAAAGGGCAGGAGGTCCATCTTTGGGAATCCCCCAGGGAAAGGTTTTCCAGGGGACCCATCGACAGTGATGCGCACCCCAGGGCGAGGAGCAGCATCAGAGGGCCCCCGTCCCAACTGGGAAGAATCACCCACCTCCCTCAGCTCCCTCATCCGCACCCCAAAATGCTATCACGTTTCCTCAGTCAATGAGAACGCTGCCAAGCGCCTGTGTCGCCGCTACTCCCGGAAGCTGATCCAACACACCAGCGCCCAGCTCCTGCGAACTTACCCGGCAGCCACACGTATTGACTCCACCAACCCCAGTCCCCTACTCTTCTGGCTGCATGGAATACAGCTGGTCGCTCTCAACTACCAGACCGATGACCTGCCCCTGCAGCTGAACGCGGCCATGTTTGAGCCTAACGGGGGTTGTGGGTATGTACTGAAGCCCCCGGTCCTGTGGGATGCCAGCTGCCCACTCTACAGACACTTCTGCCCCCTTGACAGAGACCCAGAGGGCATGAGCCCCGCCTTGTTCACTCTCACTATCATCTCTGGTCAGAATGTATGCCCAGGGACCACAGCAGGCAATCCCTACATTGAGGTAGACATCATGGGCATGCAGGCAGACGGGTGCCACTTCCGCACCAAACCCATCCACCGTAACCCCCTGAACCCCATATGGAACCAGAGCTTCCACTTCCCCCTACTCATGGCTGACCTGGCCTTCCTACGGTTTACTGTGGTGGAACACAACAGCTCCCAGACCACGGCTCATAGGATCATACCactcagagcactcaggacaGGATACAGACATGTGCAGCTGAGGAATCAGCACAACGAGGCCCTGCCAGTCTCAAGTCTGTTCATCTACAGCCATAGAACTGAAGACAGTGGAGGAGCAGGTTCACAGCCTGCATCACGGctcTTCAGTACAGAGGATCGAAGGGCTGCTGTGCAGTACAGGGTCACCGTACATGGAGTCCCTGGGCCTGAGCCTTTCATAGTGGTCAGTGTGAGTGAGAGGACCACTGCCAGACAGCTCCTACACATTatccatccatccctctcctcctccactcgcttctccctctcttcttgcTTCTTGATGGAAGAGAGGGTGGCATTGCCccgggagaggggggagagtaggggtgagaggggggaggCTCGAAAGCCTCTCCTGCAGAGGACCATCAGGCCTGAGGAGGAGATATTTAGGGTCATTCAGAGTTGGAACCCTGATGAAGGCTACCTGGGCAGAGTGTGCCTCAAAACGAGAGAAAAGCCTTTGAATGAAGGGAAGACAGATATAGAGATGGAGGTAAGCTGTGGACTGGAGGATGATTCCTTCCTGGTGGAAGTACATGGAGTGTCTCCTGACCAATCACAGATGACCCTCAGAGCTCCCCGACACATCACAGCCAATGACCTCATCCAACAGACACTGAGCAAAGCCAGACAGTCCAGCGTCCTGCTGTCTGCGGGCAACGCCAGCGACTACATTCTGATAGAGGAAGTGGTCAAGGAGCCCCTGGGGCGCAGGCTCCCTGCCAAACCCACCCAGAGGACCCTCCTGGACCAGGAGTGTGTATTCCAGGcccaggggaggtggaggggtcaggggaaaTTCATTCTCAGACCCCGGGAGCAGGCTCAGGGAAAGGAGACAGCTCAGCGTGAAGACTGTGTCAGACCAGTTCGCGAGGATCGGCGGAAAGGAATATCGTTGGCGAGCGAGTTGAAACGACTGACAGGCCGGAGCCGGGCCGTATGGATCGGGGCTCACGCCTGCTCTGAGGTGGTGCACAGCAAGGACGAGAGGGCAGCGTGCTGTCTTCATCTGAGCGAGACCAGAGAGTGACGCTAGTGGTTCTCCTCTACACCCGTTCtactacacacgcacacaagGCAGTCTAATTAAAATGTCCAAGTTGGCCTGACAGGGCAGATGTGGAATTGGAGCCGTGCAACTCCTGGGTCTCTTTTGTCACTCAGGGCAGTCCACAATCCAATAAACCTTATCTTAATCTACCTGGAGCTGGCACAATATCAGCATGTGAATTTATTGAAGACTTGCATTAGTTCCCCAAACTAACGCCTAACACAATCTTCTGGCATGCAAAGACCCAGGTTTGAATCCAGTCGGACATAAGAGACAAACACACCAACTGTAGGACAGATACAGACCAGCAGATGGTGATATTGTGCTTTCCTATGGTTACAGAAGACCTCAACCTGACAAGTCTGAAGTGGTTGAAGAATCAATCATCAGACAGAGCCGATTTCACCGGTCATCCCTCAAACCTAATTTAAACATTAAAGCCTATGGGATTTGTTCAACCGTTCACTACTTTACTTTACTGCTGGTTTAAAATACTGTGATATTACTATTGTATTACTATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2124650 lncRNA downstream 242101 33043773 ~ 33044740 (-) True G1856551
TU2124463 lncRNA downstream 255415 33031225 ~ 33031426 (-) True G1856383
TU2124453 lncRNA downstream 265381 33019516 ~ 33021460 (-) True G1856373
TU2124450 lncRNA downstream 269863 33016695 ~ 33016978 (-) True G1856370
TU2124237 lncRNA downstream 310997 32969534 ~ 32975844 (-) True LOC110502608
TU2124831 lncRNA upstream 2958 33333228 ~ 33333526 (-) True G1856710
TU2124836 lncRNA upstream 6049 33336319 ~ 33336598 (-) True G1856715
TU2124840 lncRNA upstream 9072 33339342 ~ 33339655 (-) True G1856719
TU2125063 lncRNA upstream 111702 33441972 ~ 33442604 (-) True hhat
TU2125115 lncRNA upstream 185383 33515653 ~ 33515884 (-) True G1856974
XM_021580793.2 mRNA downstream 120514 33153873 ~ 33166327 (-) True dnajb12a
XM_036960240.1 mRNA downstream 145622 33038670 ~ 33141219 (-) True LOC110503103
XM_036960239.1 mRNA downstream 173056 33038670 ~ 33113785 (-) False LOC110503103
XM_036960238.1 mRNA downstream 173057 33038670 ~ 33113784 (-) False LOC110503103
XM_021580782.2 mRNA downstream 310966 32969517 ~ 32975875 (-) False LOC110502608
XM_036960259.1 mRNA upstream 111688 33441958 ~ 33550426 (-) False hhat
XM_036960258.1 mRNA upstream 111688 33441958 ~ 33550430 (-) False hhat
XM_036960260.1 mRNA upstream 111688 33441958 ~ 33550430 (-) False hhat
XM_021580803.2 mRNA upstream 260187 33590457 ~ 33601984 (-) False LOC110502621
XM_021580802.2 mRNA upstream 260187 33590457 ~ 33601989 (-) False LOC110502621
TU2124285 other downstream 640701 32637425 ~ 32646140 (-) False G1856217
TU2124286 other downstream 640701 32637425 ~ 32646140 (-) True G1856217
TU2123854 other downstream 770560 32515749 ~ 32516281 (-) True G1855822
TU2123853 other downstream 771433 32515066 ~ 32515408 (-) True G1855821
TU2123334 other downstream 1305508 31979997 ~ 31981333 (-) True G1855326
TU2125229 other upstream 265888 33596158 ~ 33601841 (-) True LOC110502621
TU2126422 other upstream 846787 34177057 ~ 34187870 (-) False kcnma1a
TU2126826 other upstream 1490506 34820776 ~ 34821565 (-) True G1858519
TU2126883 other upstream 1509630 34839900 ~ 34841662 (-) True G1858575
TU2126950 other upstream 1606419 34936689 ~ 34968861 (-) True G1858636

Expression Profile