RNA id: XM_036960258.1


Basic Information

Item Value
RNA id XM_036960258.1
length 3566
RNA type mRNA
GC content 0.48
exon number 12
gene id hhat
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 33441958 ~ 33550430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATCCTGAGCGTTCAACAATATTCCATGGTAGTGGTGTTCACTCTCGGTCTATAGGCAAGGCGGAAGATATAGCCCGAGGTATTTCTTTGTTTCACAATGCATTCTTGGCACTGATGGCCAAACAGAGCTCAACCCTTGCGGCGTTGCCGAGAGCGGAGGTCGGTGCCTACTGGGTGCTCTCTTTTGGCTCCCATCTCTACTCATTCTATCAACTGCACATATTCTCCAAAGAGCATGAAGCAGGATTGGAGAGAGAGTTCCAACTGGAGAAAGGCTTTCTAATATGGGGGCATAAAAAGGACCCTACAGACTTTGAGTGGAGTTTCTGGAGTCACTGGGCTAGAAAGTCTTTGCTGTGGACTTTGTTGGGCCATGCCGTGGTCTCCAGACTAGCCAGCTTCTTCATTCCTAAGTTCAGAGTGACAGCTCTGTTGGCCTATGGTCTCCTTGTGGCTTGCTGTGTAGTGGGGATTAAAGGATTGGGTGTGGTCCTTGGCCATCTGGGCCTGTCATTGGCTGTTGCCCAGCTGTGTAACCCTGCCCTGTCCTGGAGCTGTGCCCTGCTGCTACTTTCCACCCTCCACATCCCCCCACTGCAGGAGATACAGAGAAGCTGGTACCAGACAGAAGAGGAGTACTACCTCTTACTCTTCAGTGTGGCAGTGTGTGGCCTGCGCTTCATCAGCTTCAGCCTGGAGCACTGCTGGCGCCCCCTGGAGGCTGGAGGACTGCAGCAGCAGGTCTACTGGCTGACCGCTTACTCCTTCTACCATCCTTTGTTCTTCAACGGACCCATCCTCACCTTCAAGGACTTCCTCCAACAGATGCAGGTACCTGTGAAGGATCGTGGTGCTAGGATTACGTTCCTCTCGCTGCTGGCCAACGCTGGCAGGATCTGTGTGTGGTGGCTTATAGCAGAGTACATGATACACCTGATGTACATGCACACTATACAGGCAAACGAAACATATCTGGAGATCCTGCCACCTTGGGCATTGGGTGGGCTGGCCCTGGCATTAGTCCAGTTCTTCTATGTGAAGTACCTGGTTCTGTTTGGTGTTCCGTCTCTGCTAGCTGGACTGGATGGGCTGGCCCCCCCAAAGCTACCACGCTGTGTCAGCATTATGCACAGTTTCACAGGAATGTGGAGACACTTTGacgtcgggctgtatcactggctTATCAGGTACATTTACATCCCATTAGGAGGTTCTCACCACGGGCTGCTGTGGAAGATGCTGTCCACGGCTCTGGCATTTGGCTTTGTATGTTTCTGGCATGGAGGACATGACTACCTACAGTACTGGGCTCTGATGAACTGGGTCGGGGTGCTGGTGGAGAATGGAGTGACcatcctcatctcttctcccctCGTCTATCCATCTATTGAGCGCTGTATCTCCCCAGCCATGAGGAGGCGATGTTTGGCTCTCATCTCAGCCTTCTCCACAGCCATGCTCATTCTGTCCAACCTCATCTTCCTTGGGGGAAACCATGTTGGCAGGATCATGTGGAAGAGGGTCTTTATACAAGgttggtGTACAGTGGCTCCACCCATGTTAGCCTTCCTCTATTGCTTTGCCCAGATCGGACTGGAGTGGGAACACAACCCACCCTAAATCACCAACCCCACAGAGACTGTTGGAAGGGAGGCAGAACTCATCCTAACTCACCAACACACAGTGCTGACTCTGCTATGTGGGGAGAACAACCCACCTTAAACCACCCCACAGTGGACTcgggtagcctagcagttaagagcgttaggccagtaaccaaaaggttgctggttcaaatcctgagctgactaagtgaaaaatctctgtgcccttgagtaaggcacttCAACCCTAATTGAccctgtaagttgctttggataagagcatctgctaaatgacttaaatgtaAGTGGACTCTGCCATGTGGTGAGAACAACCCACTGTAACCACCCCGCAGTGCACTCTGCTGTGTGGTGAGAACAACCCACTGTAACCACCCCACAGTGCACTCTGCCATGTGGGGAGAACAACCCACTGTAACCACCCCACAGTGCACTCTGCTCTGTGGGGAGAGCAAACCTGTCCTTTACTACCCACCCACAGTGGGGACTATCAATGAGACCTGCTGAGGAAAACACTGGACCCATGTACGTATGTGACTATAAGAAAGTGACCTACAGTATAAGAAACCTGTCCGCCAAACTACCTGTACCTATGAGAACTGCTGCTTAATATTTGGGTGCATATAGTAAAACGCATATATTGAAAAACAATGGATGCTGTTCAGTGGTAATTTGTTGATAACCTGACAGTGAGGCTTGCAGTATCCAACCTTGGATGTTTTGGATCTGTTTAACCCCAAAATCAGCATTATACATCTCCTGTAATGGAATGGCTGAAAGCACCTCAGTATATTCCATTGACTGTGCTAATCCTGTATCTGTCTCATAGCACTAAAGGGATCAGCAGATCTGTGTCAGTTTAACTAACATGTAGTGTCGGGGGAGAAAACCCTGCTAATTAGACTAGCCTAACACTACTCTGAAAGGGATTTAGGTCACATCCaaagatggcatcctattccctagctagtgcactactttttaccaggggcaatagggctctggtcaaatgtagtgcatcaTATAGGGATCTATTTGAGACACAAGCTTAAATGGGTCTTATGACATCCCGAGAATCCAAATATCCAGTCAAGAAGAGAATACGATCTGCAGCGTTAAATCTTAAACAGTTTATGATAAGAAACCCGCCACACAAGCCTTTTCGTGACGGATTACAAGTATAGCAATAATTTCATCACACGTAAAGGTTGCTTCAAAGGGTGCCCCATGTTAGTGTTAGTCATGTAGGCTGTTCTTACTAATAATGTGCTTGTATAGATGCAGTTCGTCACCCAGTGAGCCGGCCCTAATATTTAGGTTGGCAGTGACTGACCTCGGTTCTACATGGGCCATTGTGTGTTCCTCCGTCACTGGATCCCTCACtcccttttttttctctttcactttgtttctatttctctctgtgtCCGACtgagtctctcttttctctctatgtTGATATCTGTATCCATCTCTGTCAGGGAAGAGGGCCCGGTGTCGTGTTAATTGGATGTTAATGTGATGTTTTTATACATAGCGTTCAGTAAATATTCTGCTCCTTCAGGAGGCAGCCAGGCCATGCAGGTGTTATCCAGCTAGATTCAACCCCTTGTCTCTTACCTAACATgattggctggaatggaataaatggaacggtatcaaacatatgtAAACCACATGTTTAactccgttccattaattccattctggccattacaatgagcctgtcctctatagctcctcccaccagcctcctctgctatcACTGTACTATAAGTGTGAGATGATGCATGTGCAAGGGTTTGTTCTTCTACTGTTGATGATGATAGGAGACTGTCCTGTATCTTATCATTGTTATAATGGTGGCTTCACCTATTGACATGGAACTTTGTCTACTTACATTTTTGCCCCTATCGAATAAATAGTTATTTCTTCAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2124840 lncRNA downstream 102303 33339342 ~ 33339655 (-) True G1856719
TU2124836 lncRNA downstream 105360 33336319 ~ 33336598 (-) True G1856715
TU2124831 lncRNA downstream 108432 33333228 ~ 33333526 (-) True G1856710
TU2124820 lncRNA downstream 127563 33313989 ~ 33314395 (-) True G1856699
TU2124650 lncRNA downstream 397218 33043773 ~ 33044740 (-) True G1856551
TU2125144 lncRNA upstream 1272 33551702 ~ 33551927 (-) True G1857003
TU2125227 lncRNA upstream 3821 33554251 ~ 33556347 (-) True G1857084
TU2125268 lncRNA upstream 71061 33621491 ~ 33622187 (-) True G1857117
TU2125287 lncRNA upstream 93542 33643972 ~ 33650815 (-) True G1857134
TU2125454 lncRNA upstream 219505 33769935 ~ 33770199 (-) True G1857290
XR_005039170.1 mRNA downstream 111680 33289865 ~ 33330278 (-) True LOC110502617
XM_036960250.1 mRNA downstream 111688 33286841 ~ 33330270 (-) False LOC110502617
XM_036960251.1 mRNA downstream 111688 33286841 ~ 33330270 (-) False LOC110502617
XM_036960252.1 mRNA downstream 111688 33286841 ~ 33330270 (-) False LOC110502617
XM_021580793.2 mRNA downstream 275631 33153873 ~ 33166327 (-) True dnajb12a
XM_021580803.2 mRNA upstream 40027 33590457 ~ 33601984 (-) False LOC110502621
XM_021580802.2 mRNA upstream 40027 33590457 ~ 33601989 (-) False LOC110502621
XM_036960261.1 mRNA upstream 40027 33590457 ~ 33601995 (-) False LOC110502621
XM_021580804.2 mRNA upstream 52088 33602518 ~ 33617557 (-) True LOC110502623
XM_036960266.1 mRNA upstream 107058 33657488 ~ 33663402 (-) True LOC110502626
TU2124285 other downstream 795818 32637425 ~ 32646140 (-) False G1856217
TU2124286 other downstream 795818 32637425 ~ 32646140 (-) True G1856217
TU2123854 other downstream 925677 32515749 ~ 32516281 (-) True G1855822
TU2123853 other downstream 926550 32515066 ~ 32515408 (-) True G1855821
TU2123334 other downstream 1460625 31979997 ~ 31981333 (-) True G1855326
TU2125229 other upstream 45728 33596158 ~ 33601841 (-) True LOC110502621
TU2126422 other upstream 626627 34177057 ~ 34187870 (-) False kcnma1a
TU2126826 other upstream 1270346 34820776 ~ 34821565 (-) True G1858519
TU2126883 other upstream 1289470 34839900 ~ 34841662 (-) True G1858575
TU2126950 other upstream 1386259 34936689 ~ 34968861 (-) True G1858636

Expression Profile