RNA id: TCONS_00051913


Basic Information

Item Value
RNA id TCONS_00051913
length 606
lncRNA type antisense
GC content 0.43
exon number 2
gene id XLOC_026653
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39945865 ~ 39951527 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttattagttttttcttcttttttttaatctgtatacTCTGTCTTTACAGAAAACGTCAGCTAGGCTCATGACAAAGAGAGGAAAGACTAACAAATATGATACAGATATTACGTAACACTACACATCCTGAACTCAAATCAATGTGATTGAGCACTGGGACTAAAATAAGAACCAGAGTTCCATTCGGAAACCTGAAATTGCATATCCCGTGTTCAACACCTTGCCCAATCACAGTCAGATCAAATGCTGTTCCGCACTAGGATCGGTTGCCATTTCTGGCTGGCTTTTAGGATGATATTACATTtgaagaaaaaacaaagaaaactttGGCTACAGAAAGAGGTCGTCATCCCCCGCTCAACTAGTTGCTGCACCCTTGAGTGCGGACGGTGAATCTGGGTGTGGCTCGATATAAGTTGCCCTGCCTTCTGGTCCCGCAGTGGCACTGGCTGAGATGGTGCTGAGACGGCGAGTTTCTTTCAAAATTGCCAACTTGATCGCAGCATCCATTTCTGCATCCTCTTTAGCTTCTTTATTGCTCTCCTCCAGATGTTTCATCAACACAGCTACGACCACGTTAACCAGCACAAACTGAGCCATTAGAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051912 lncRNA downstream 249807 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 382564 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 490962 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 832318 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00053079 lncRNA downstream 970167 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00053081 lncRNA upstream 228609 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051928 lncRNA upstream 299889 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 444536 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 444536 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 451529 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051910 mRNA downstream 249799 39691525 ~ 39696066 (-) False XLOC_026652
TCONS_00051911 mRNA downstream 250009 39692233 ~ 39695856 (-) False XLOC_026652
TCONS_00051908 mRNA downstream 297844 39630930 ~ 39648021 (-) True XLOC_026650
TCONS_00051907 mRNA downstream 318453 39619571 ~ 39627412 (-) True XLOC_026649
TCONS_00051905 mRNA downstream 457226 39472342 ~ 39488639 (-) False XLOC_026647
TCONS_00051915 mRNA upstream 18828 39970355 ~ 40051425 (-) False XLOC_026655
TCONS_00051916 mRNA upstream 23722 39975249 ~ 40054615 (-) False XLOC_026655
TCONS_00051917 mRNA upstream 48486 40000013 ~ 40054749 (-) False XLOC_026655
TCONS_00051918 mRNA upstream 48785 40000312 ~ 40054738 (-) True XLOC_026655
TCONS_00051919 mRNA upstream 104958 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051909 other downstream 296303 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 686188 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051892 other downstream 1027148 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051881 other downstream 2172065 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 2245914 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051914 other upstream 5831 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 137158 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051924 other upstream 202767 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051938 other upstream 575352 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 575355 40526882 ~ 40529779 (-) False XLOC_026667