RNA id: XM_021580815.2


Basic Information

Item Value
RNA id XM_021580815.2
length 9046
RNA type mRNA
GC content 0.50
exon number 35
gene id dlg5a
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34474361 ~ 34535648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATGGCATTGTATGGGAATTTGATTGACAGCATGCAGCAGCTGCTGAACAGCCCAGACATGGCGGAGGATACAGTGTAAGTGGGGAACGGCGAGAGAGTTACGATAGTTTTCCTAGCAGTTCAGTCGGTTTAGTGCTTTATAGAAAAAGCAAATGTGTCAGGCATGTTTTCTTCGGAATAACACAAAAATGGACGAAGTTGCCAGACGTAAGTAAGCTGGGAAAATGTATATCTGTTTAGTGCAGTTTACGGTCGTAGACAACAAATATGGCTTCTTGTGCCTTTTCCTATTTGTTATAAACAACTGCTCTCCCATGCCATTACATGTCATGGCTGTAATGCAAAATTCATACAAGTGACAATTAGGAAGTTAGTTCCTTGTTCGCTTATCGGGCAGGGGGTCATTTTGGAGAAATAAAGCCGAGGATACGTTAGCTAAACAgactgctagctagttagctagctacggAACTGAAGCGAACGGCAATGGAGCCAAAGCACAAAGAGTTGTTAGAACAATTCCACCAAAACTTGCTGGACTCTATAACAGACGCAGATCGACTGATAGAGTTACTGATACTCTCCGGTACTCTGAGCCAGCTCGACCGCTTCGAACTGGACCAAAACTGCTCTTCCAGCGCGGAGAAAGTGGACCAGCTTTTGAAGATGCTTGTGAACAAGGAAAGCGACCATTTCCTCGAGCTGTGTGTGGCCTTGGAAAAGGCGTACCCTGACCTGTATTCTGCACTCTTTACCAACGGCGGTGGACCCGTGGACCATTCCTCCGGCTCTACATACAGTGTTCTCTCCACCATGCCCTCAGACTCTGAGAGTAGCAGTTCCCTAAGCAGTGTTGGTTCACCTCCCGGTAACGGCTCAGCCTCGTCCCCGCCCCCGGTCGTCAACGACAACCGGCCAGCCGGTGACAACCTGGACACCATCCTGTTCCAGCTGCGTCAGGTGACCCGTGAGAGGGACGAGCTCCGCAAGCGCCTGGCTCTGGCATCGCCCGGCACCACCTTCGACGACTGCAGGCCAAATTCCAAAGCCAGCCACGACTACGAGCGACTGAAGAGTCAGTGTATGCGGGCCATGGCAGACCTGCAGTCTCTACAGAACCAACACACCAAGACTCTGAAGAGGTGTGAGGAGGCCGTCAAGGAGGCTGATTTCTACCATATGCTCCACAGTCGTGTGTTAGGAGACCAGTCTCAGCTGAAAGAGGAGCTGGATGTGTTGAGGAGAGACAACACTCAGCTGGTCAGGGAACACAACCACCTGAAGCAGAGCTGTGAGGAGCTCCGCAGGCTGCACAGCGAGGACCAGAAGGAGGTGGCCGACATGAGGCGGCAGCAGCAAGAGGTGATGAGAGAAAACGGTTCATCAGAGGTTCTCAACAAGCTCTATGACACAGCTATGGACAAGCTGGAGGGGGTGAGGAAAGAATACGATTCGCTGAGCAAACGCTACAGCGAGAAGGTAGCTAATCACAACACGGACCTGAGCAGGCTGGAGCAGGTGGAGGAAGAGAACCGCCGATTACAGAAACAGATGGACACGTTGCTGAGACAACGAGACACGGCTATACACTACCAACAACAGTGCTCTACGTCCATGAGGAGGTTTGACTCTGTACAACAGGAGCTGAACAAGTCTTCAGGCCAGAACAAGGAGCTGCAGAGGGAAATGGAGCGGCTGCAGTCGGAGGTGACACGCTGTAAGAACTTCCAGCTGAAGGCAGTAAAGGACTGTGAGAAGTACAAGGAGGAGAGGGACTCTGTGTTCAACGAGTACAGGCTCATCATGAGTGAGAGGGACCAGGTGATCAAGGAGCTGGACAAGCTGCAGACAGAGCTGGAGGCTGCAGAGGCCCGCCTCAAAAACACCTCGTCTGAAAGGATGGTGGCCAGCGAGGAGATGGAGGCTCTCAGACAGGAGCTGAACTCGTCGTTGGTGGACCGGGACAGGGCAATCTGTGAGAGGAACGAGCTGTTGGAGAAGTACTGCCACGAGGTGAAGGATAAGGCTGAGGCCCAAAAGGAGCTGAGCCAAGCCTGTAAAGATATTGAGACGGTCCGCGAGGAGAGAGACGTGGCCCgcaaggagaggacagaggccATCATACAGAGAGACCAGCTACTGAGAGAATACTACCAGGCAAGACAGAAACAAGACTCTGCCACCCTGGACATAGAGCGGGCCAACAAGGAGATTGAGGTGTTGAGGAAGCAGTATGAGGCCATGTCCCAGGAGCTGAAGGAGGCTACGCAGGAGGCCGAGGTGGCCAAGTGTCGACGTGACTGGGCCTTCCAGGAGAGAGACAAgatagtggcagagagagagagcatacgGACGCTGTGTGACAACCTGCGTAGGGAGCGGGACCGGGCGGTCAGCGATCTGGCCGACGCCCTGCGTAACCTTGACGACATGAGGAAGCAGAAGAATGACGCGTCACGGGAACTGAAGGAACTCAAagagaagatggagagccAGCTGGACAAGGAGGCCAGGTTTTGTCAGCTGATGGCCCACAGCTCCCATGACTCCGCCATCGACACAGACTCTCTGGAGTGGGAGACGGAGGTTGTGGAGTTTGAGAAAGACAGGGATGACATGGATTTAAAGGCACTTGGGTTTGACATAGCAGAGGGGGTAAACGACCCATATTTACCAGGAGATTGTGGAATATTTGTGACAAGAGTGGACAAAGGAAGTATTGCAGATGGAAGGTTAAGAGTGAACGATTGGTTGCTGAAGATAAATGACATGGACCTGACCAACAAGGACAGGAAGCAGGTGGTAAAGGCGGTGCTTAACAGAGGCGGGCTGATCAACATGGTGGTTCGCAGGAGGAAGTCCCTGGGAGGAAGGCTGGTCACCCCTGTACACATCAACCTGATCGGACACAAAGACAGTGGTATAGGTCTGGAGAATGGTGTGTTTGTGACAGCCCTCGTCCAGGGGAGTCCTGCTTCCAGGGAGGGATCTCTGACTGTTGGAGACAGACTTATCGCTATCAACGGCATCGCTCTGGACAACAAGTCGGTGACGGAGTGTGAGACACTGCTGAGGAACTGTAGGGACTCTCTTAGCCTCTCTCTCATGAAGTTCTTCCCTCACAGTTCGTCGGGCCAGAACATCTTCGACAGCCTGCGCGAGTCATCGTCCAACAGCCGTCTCTCCGAGGTCCACTCCAGGAACAGTCGTAACCTCAAACACAACagctccacacagacagacatcttcTGCCCCGACACAGGTGGGAGTGGGGGAGGTGGTAGTGTCAATGTccaaggagagaggaggaaaagcaGGGGTGGGGAGGCCGAGGAGGGGATGGGCCCCTACGGGGATGTCAGGAAGCCCTTCTCCACGGGGTCTCTCCATGCCACCAGCCTCCGGCCGTCCTCTGACCTTGGTCTGGGTCCCCCGAGCCGCTACGGCCCCAGCGCCTTCCAGGAGTGCTGCTCTGGGTCCCCCTACGCCAagccccctccaccccccatgACCTATGACCCCTCTAACCCCCCCGACTGCATCACCATGGAGACCACCCTGGAGAAGAAACACAGCGGCGGTACCTGGCCGAAGATGATCGTCGGCGGGATGTCTGTCGCCGTGGATACGACCACAGCGACGACTCCGACCCAGCTGTCCATCTTCAAGTCACCCAAACAGAGGAAGTCCATCTTCGACACGGACGCCTTCAAACCACGGCCTGAGATGGCTCCCCCATCTTCCAAGATAGAGTACCTGTTGCCCAGTCAGCTGGTGGCCCACTCCCCGCAGACCTCCAAGACggaatctctctcctcctcctctacggCCACACCCACCCCCCCTCTGCCGCCTACCCGCAGTGATTCGTTCAAATTCAAACACAAACAGCAGAGCAATTCCGCCTCCGACTGCACGCTCACCTCCGACGGGAACGGCGGCAAGGGGGAGGCTGTTTCCATGGTTACCGGGGAGGGCCACGGGGAACACGAGATGGaacgagaaagggagagggaaagagacagaaacGGGAACCACTACTTCCTGGACGGGAAAGTGCTGACATCGAGGAAGTCATGTGATGAGGACATTGGACGCACCAGGGGGGAGGAGCCTGATGTGAAGAGGCCCCGCCCTAAATCAGCACCAGCTCTCCGACGCAGGATGACCCCCCAGTCCATCACTCTGCCCTCCTTCCAGAGCTACTCCAATGACGATCACTCCCCAGAGCCCAGAGAGATGCTTCGCTCCTCTCCCAACCGCTCTCACAGACACAGTGTGGGCTTCGTCTCCACCGTCTACAACAGTACCCTGCCTGCAAACTCGGCCCATCGTGGCCTGGCCCCGTGTCCCGCGGTGACCGCAGTGATGAGGAACCCAGTCTACACAGTCCGCAGCCATAGAGTCCACACCAacaactgtccctctgtctcctcccagATCTGCCAACACCAGCACAACAACCAACACCCCAGtccgcAGCACCAGGGGCGTCTGAGCCTGGACCTGAGCCAAAAGCGTCCAGCAGCAGACTACTCCGAGTCCTCGTCACGCAGCAGCCGCACCTCCCATGGTACCAACTCACTACCCTCCAGTGCTCGCCTGGGCCTTGATTCTTCCAGTAACGTCCAGTACCGGACAGAGAGGATTAAGATCCCCTCCACTCCCCGCTACCCTCGATCTATGCTGGGCTCTGACAGAGAGTGCAGCAGTCCCAGCCTCATCACTCCCCCCCAATCACCTCTGAACCTGGAGACTTCCTCCTTCGCCAGCAGCCAATCACAGAGCTCCATATCCACCCTGCCCAGAATCTCCGTCAGCCCTGTGCCAATTGGAGAGCGGAGGAAAGACCGGTCTCTGCACCGTAACAGGTCTTTTCTGAGGATCCCTCTGGCTGCTAGGCCGAGGTTCTCCTCTCTCAGGAGCCTCAGGCCGTACCTGGAGGAACCTCGTAATGTGATCGTTCACAAAGGGGCGGAGCCTCTGGGCATCTCTATCGTCAGCGGCGAGAACGGCGGTATTTTCGTCTCCAAGGTAACCGGAGGCAGCATCGCCCATCAGGCCGGGCTGGAGTACGGCGACCAACTCCTCGAGtATAATGGTATTAACTTGCGTAATGCCACAGAGCAGCAAGCCAGGCTGATAATTGGTCAGCAGTGTGACACCATCACCATCATGGCTCAGTACAACCCCCACATGTACCAGCTGGGAAACCACTCACGCTCcagTTCTCGTCTGGAGCCGGTGAGCAGCCAGTCAACTCCCCATGGCAGTGGAGCCACCACCCCTGACAACCACTCTACTATAGACACTCTGAGTGAACAAGACGAAGGAACACTCACCCCCTCCTCCAAACAGACCACCCCTACAACTAGTCCTCATAGTTTCATCAGGATGTTGTCAGAGGGTAGTCGTAAGGTGTGTGAACCACGGGTGGTGACGGTGCGCAGAGCCCAGGGGGCAGAACTGGGGCTGGGGCTATGTGGAGGGAACCTCCGCGGGGTCTATGTAGAGAGTCTGGAAGAGGACAGCCCTGCTAGGGGAACAGAGGGTCTGCAGCCTGGGGACCTCATACTGGAGTATGGGTCAGTAAACATGAAGAACAAGACAGTGGAGGAGGTGTATGTAGAGATGCTGAAGCCAGCCGAGACGGTCACACTCAAAGTCCAACAACGACAGGAGGACTTCAACATTGTCAAAGACACACCGGGGGACGGCTTCTAtatcagAGCACTTTATGAGCGGACAGTGGAGGCAGAGCTGGACCTTAGTTTTAAGAAGGATGACATCCTGTATGTGGATGATACTCTACCAAAGGGCAGCTTTGGCACCTGGATGGCCTGGCAGCTGGATGAGAATGCACAGCAGATCCAGAGAGGACAGATACCCAGCAAATACATgatGGACCAGGAGTTGTACCGTAGACACAGTATGACAGAGCTGAAAGACGACAAGGACAGTAAGAGCCTCTCTGCCGCCGCCAGGCGATCCTTCTTCAGGAGGAAGCACAAACACAAACGCAGTGGCTCCAAAGATGGCAAGGAACTGGTGGCTCTGGACGCCATTAGCACAGACTCTATACCATTCCTAGAGGACTGTGTGAGCATGGCGTACCAGCGGGTCCAGAAGGTAGAGTGTGTGTCTCCCAGGCCGGTTCTGATCCTCGGTCCTCTCTCAGACCCCGTCAAGGACATGCTGGTCAAAGAGTCCCCCGGGAAGTTTTGCAGATGTGTCCTGGAGGTGATGAAGGCGTCCCAGCAGGCTATAGAGCGCGGCGTCAAAGACTGCCTCTTCATCGACTACAAACGCAGGAGCGGCCATTTTGACGTGACCACCGTGGCCTCCATCAAGGAGATAACAGAGAAGgacTGTCACTGTCTGCTAGACATCGCACCCCATGCCATTGAGAGGCTGCACAGCGTCCACATTTACCCAATCGTCATCTTCATCCGCTACAAAAACTCCAAGCAGATAAAGGAACAGAAGGATCCAGTGTATCTGCGGGACAAGGTCTCTCAAAAACATTCCAAGGAGCAGTTTGAGGTCGCACAGAAGATTGAGCAGGAGTATAGCAAATTCTTTACAGGTATTGTCCAGGGCGGCACTCTTCCCTACATTTGCACTCAGATCATGACAATAGTTGATCAGGAACAGAGTAAGGTCCTGTGGACTCCCCTTGGCTGCTCCTAGGGGGTGGAGGCCACCACTGCACGCTGCGTCACTGCGCCTCATCTCCACTCACAACAAACACTAAAAAACCTTCCACACTATACCAATAGGTACACTACAGTGAGCTATTACACATGTAAACTAGTGATATTTTTGTTATATAGTTTTATTATGATGTTGATTCGTACCTTAACCGGAGCCTCTTATTTTTCTGTGTATTCTGGAGCAGGTTGGTAGCACTGACAGTTGATGTTAAAGTTAATTCGGTCTTCCTTAAGGGTTTTATGGTTGTGTTTTTGTAATGTTGCGTTGTATGCATCtgtttacagttttttttaaaaacgaGTCTTGAGTATTGGTGTTCAATGTTCTGCTTGAATGTgcattacaacccccccccccccagatgaaGTAAagaaccctgacccagaatcggCCCCAAACAAACCTGTGTACCAAATGACATCAACCTGTTTTACACACCCCGTTCAATGACTGACAACTAATAATGTGGAAGAATAATGTctgcgtgtgtgtatgagagtTTGTGTGTACGAGTGATAGTTATGTTATTGATAAACTAATGACTTTGTTGGTTGGATTGAAACATGGATTTTGATGTTTTGAAGTTGACGCCATAGAAACTAAACCTGCAGAACAGATATAAAGCTCTCCAAGCGACATTTCTTAtctgtaaaaaaagaaaatgtaatcCGAAAGTCGATTTTTGGATCGGTCAATCAATTCTGGCTTCAGACCAAACTTTTATGTGCACCATGTGTGCAACAGTGTATCAATCAATTCAATTATGTTTCTGTAAGAAAGAAAAAGCCATGAAAATCAGACATGGCAGTAGCGAATGGTGTCTGTTCTACTCGTTATGTTTCTATGGTCACTGTATGTGAGTGGACAGTTTACAGGCCTATCAGAAGTGCCTTCTGTCGTAGACTTGGTCCAAAAACAGACCCCCAGCCCTTACCCATTCAGATCTAATGGAACAGGATAAGTAGAAGCAATATGGAGGTAGAACCTCCCCACTGCCCATTGGAAGGCTAGGTGGAGCCATCACCATGTTGTTTACACCTATCTGGTACTTTCAGATCTGTAAACACCATAGTGTTAACACTAAATCTGCAAACACCATAGTGTTATCACTATAGATCCACTTACAATGTTAAGTGTTAACACTAAAGATCTACAAATAAACACTATAGAGCGTAAACGCTATAGATCTGCAATGCTCGGGCTTGTTTTGGGGCGGGGCAGTACAGAGCATATGACAATGGTAAGGTTGTGAGGGCGACCACCTCAGAATGCACTCCAGGGCTAGACAGACCACTGTGTCTCTATCACATGCTATCTCTTGGTCACATATTTAAAGACGCTATAGAATATAACAAATATATGTGTGTAGGAGTATACATACAAACTCACAGGCACTTGAGtacctgtatgtacagtatgcagATGCATCTGAGATCTTATATTAGATGTATTTTGACTAGGTCTCAGGCCTAGGGAAGTTCAAACAGTTAAGTCATGTCTTAGCAGGTATTAGCATGTTTTTTTAACGGTTTTATTTTCGTCTTGTTTTGTGGTTTGTTGTCAGTCAGTTTTTAAATGTACTCACAAACCAGAAAGACACCATGGAGCAAATGTGCAGGGGAAAATCTTTCTTAAAGAAAATACTTTGTTTCTCTTCCTTAAATCCGTTGAAATGTTAGgttttttcattatttaatttctttattttttttatccaagAGGCACAAAAATATTGCTATTGTCCCTCATTCTTCTGTCATCCTTGAACCCCATTCTCCTGTATCCTAATGTTGTGCCAAAATCCAGTACGTCAGTTTTATCTTTTTACTTCTGTTTTGCACTTGTTATTCTGTGGACCTTAAAACAAATAGCTGTTTCCCAGTAGACTTTATAAATAGGTACTATATTATCATTTTTACTGTAACTAATTCACATTTTAAATGTATCACGTCAGTTCCTTACATTTCATTGATGGCCTTTTTATTCTTTAACCTTGATTAGAAAACTGACAGATTGCTCCTCAGTTGCATTCTCGATGAAAAAGGGATTTCTTGCACAGTTTATCAAATGAAAATCGGACATGAAGTTTGACTATTGGGCTATATGATTAGGCATAGTAAGTAAAATTGTAATGTAACCCATTTTCTGAGTAGATTTTAGATGGTTTAAAATTAGAAGAGGGATGCCACGTAACATGGTTTTATTTTTAGGAGGAACGACTAGTTGCCAGGTACTATTCTGATTGCggttttctttattaaaaataATGATTTGTATCAAATGTTGAGACATTAACATGAGAATAAAAGTCTTTTTCTTTATCACGACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126470 lncRNA downstream 188155 34139058 ~ 34286206 (-) False G1858185
TU2126471 lncRNA downstream 188155 34201685 ~ 34286206 (-) True G1858185
TU2126534 lncRNA downstream 206173 34267374 ~ 34268188 (-) True G1858244
TU2126443 lncRNA downstream 216623 34256097 ~ 34257738 (-) True kcnma1a
TU2126407 lncRNA downstream 286491 34177057 ~ 34187870 (-) False kcnma1a
TU2126759 lncRNA upstream 113141 34648788 ~ 34649348 (-) True G1858455
TU2126760 lncRNA upstream 114012 34649659 ~ 34650113 (-) True G1858456
TU2126877 lncRNA upstream 275669 34811316 ~ 34811591 (-) True G1858569
TU2126827 lncRNA upstream 279165 34814812 ~ 34815387 (-) True G1858520
TU2126885 lncRNA upstream 308298 34843945 ~ 34844171 (-) True G1858577
XM_036960270.1 mRNA downstream 4832 34177056 ~ 34469529 (-) False kcnma1a
XM_036960268.1 mRNA downstream 4833 34177056 ~ 34469528 (-) False kcnma1a
XM_036960275.1 mRNA downstream 4833 34177056 ~ 34469528 (-) False kcnma1a
XM_036960274.1 mRNA downstream 4834 34177056 ~ 34469527 (-) False kcnma1a
XM_036960308.1 mRNA upstream 12989 34548636 ~ 34573061 (-) True anxa11a
XM_036960311.1 mRNA upstream 258694 34794341 ~ 34810118 (-) True LOC110502637
XM_021580849.2 mRNA upstream 287373 34823020 ~ 34837635 (-) False slc25a16
XM_021580850.2 mRNA upstream 287373 34823020 ~ 34837641 (-) True slc25a16
XM_021580853.2 mRNA upstream 379855 34915502 ~ 34928362 (-) False LOC110502644
TU2126422 other downstream 286491 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 872520 33596158 ~ 33601841 (-) True LOC110502621
TU2124285 other downstream 1828221 32637425 ~ 32646140 (-) False G1856217
TU2124286 other downstream 1828221 32637425 ~ 32646140 (-) True G1856217
TU2123854 other downstream 1958080 32515749 ~ 32516281 (-) True G1855822
TU2126826 other upstream 285129 34820776 ~ 34821565 (-) True G1858519
TU2126883 other upstream 304253 34839900 ~ 34841662 (-) True G1858575
TU2126950 other upstream 401042 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 707467 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1418573 35954220 ~ 35959205 (-) False LOC110502661

Expression Profile