RNA id: XM_021580849.2


Basic Information

Item Value
RNA id XM_021580849.2
length 4470
RNA type mRNA
GC content 0.45
exon number 9
gene id slc25a16
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34823020 ~ 34837641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtGACGTCATTGACATGCGCCGGTGCAACTCTCGATGGTTGGTGATCATAAAAACACGTGCCTTCACCCTTCATACATTTAACCCAGGTAGAAAACTGGTTTTGTTGCTGTTTTTCTAATAACTTTTGGCTATCAATTAGCTACGGATGACTTGCAAAAACAGGGACCGAAAACTGAACTAACAGATTTGTCGCTCGGTGAAGTTGTCTCTGCGAGCGCCCGCTAAGCATGTTTGTTTACTTGGGGAATCCGGAAGGGCCTGAGGCTGCCTGCAAATGCTAACGCGCCCGCTAGCTCCATTGTGCAACGTTCGTTCATCTGACAGTGTTGACCTTGCAGCGGTTATGGCTGCATTAGGGTCCTgattgaacacacacaccatggcaaCTGAGGCTGCAGTCTCCACCCCTGGTCGTCCTGCAATCCCCAACCACTCTCAGGGGGACTATCACTTTGTCCGCTCATTCGTAGCTGGAGGTGTAGCTGGATGCTGTGCCAAGTCCACCATTGCTCctctggacagagtaaagatccTACTGCAAGCCCATAGCCCCCACTACAAAGATCTGGgaGTGGTAGCCACTCTCCGTGCTGTGCCAAAGAAGGAGGGTTACCTGGGGCTGTATAAAGGCAATGGGGCTATGATGGTCAGGATATTCCCCTACGGAGCCATCCAGTTCATGGCCTTCGACAAATACAAGAAGATCCTCAGTAAACAGCTGGGCATCTCTGGACACATCCACAGGCTAATGGCCGGTTCTATGGCAGGGATGACAGCAGTGATATGTACGTACCCTCTGGATGTGATAAGAGCCCGTCTGGCATATCAGGTGAAAGGACACCATCGCTACACAGGCATCGGAAATGCCTTTCAGACGATATACCTAAAGGAAGGAGGCATCCCTGGCTTCTACAAAGGTCTCATCCCAACCCTTATAGGCATGGCTCCATATGCAGGGTTCTCGTTCTTTACCTTCGGCACGCTGAAGAGTCTAGGTCTGGCCCACTTCCCAGAGCTACTGGGGCGACCGTCCTCAGACAACCCAGAGGTGATGGTGCTGAAGACCCATGTCAACCTGCTCTGTGGAGGGGTGGCTGGAGCTATCGCACAGACCATTTCctATCCTCTAGATGTTGCCAGGAGAAGGATGCAGTTAGGAGTGGTACTTCCTGATTCGGACAAATGTCTAACCCTGACCAAGACTCTGAAGTATGTGTACAGTCAGTATGGGATGAAGAAGGGTCTGTACAGAGGGCTGTCTCTCAACTACATCCGCTGTGTGCCCTCTCAGGCTGTGGCCTTCACCACCTATGAGTTCATGAAGCAAACCCTCCACCTCAActagctgctccctccctccccatccatcCAACTCCACCCTTCATCTCTGCCTAGCTGGATTGGGGCACGTTCACTAAGGCTAAACACTCAAACGTTTAGAGAGCAAAAGATCTCTAGTAGCGGTCTATCTCAAAACAGCCTGACCAAGAGCAATCACTGGGGCTATACATTCTGAGATGTTTAAGAACTTCCTTAGGAACTCCCTGCATCTCAACACAACCTGACCGGGGAACTTCCTTAGGAACTCCCTGCATCTCAACACAACCTGACCGGGGAGCTATAAATTGGACAACATTTTTCTGAACGTCTTTCAGTGCTCTGAATATTTCTTATTAGATGTGTTAATTTACCCTAGTTAACCTTTTCTGTTTTAAGGAGGTCGGCTTCCGCTTGGAGGTATTGAACTCTGCTACCAGAGGAGGCCATTGAGGCTCAGCCACTGGAGCCACGCTGAGCCCAGTCGCTCTTTGTTCCAGTCGGAAAGCAGATGAAGGCACTGGGCCCCATGGCAATGCCTCAAACAACTGGCAGTGCCAATCCAGTGCCCCTGTctgttctcagctcctgcttttgtGATTCTCCCTCTTATGTCGCAACTATTGCCATGGATACCTATGGACAATGACTCCCTCTGCTTCGATGAGTGGCTATGTGCAATGAACCCCTAACAACTGTCGTTGGTAATGGCATAGCAACCCAATTCTGTACACTGCCTCCCACCCTACCTAAGAAGTCACACAGACAATAACGGAGGGGAAAGTCACACTGGGCAATCTGCCTTAACATAATCGGAGGTCTTCTTTTCCTCATGTACCTACCTGACACTTGTGAGTACAAACCTAGACACATAAAATAATGAGACAAGGATTTAAATGTGTAATATGTCCGTTTTTATAAGAGTTATAGGACAACTCCTACATTTTATGAGAATTAAGAACACTCTCCCCAAGCTTGTGTTTAACACAGAACTGTGCTTTTTGAGCATCCTGAGTTTAGTAGAATCCAAATGATAAAAtcccaaaacatcacattcagtTTGTTCAAAACTGAACATCAAATGATATTATTTTGATGGTCTCCCAAAAGTCTCATTGTCGGACATTGAAACAGGTTTGCCCCATGCAGTTTAACAGATATGGTGTGTATCTGTAGGAGTGTTGTCTTTGGTGTTGACGTGTTTGTGTCCATTCAGGGTTTAGTGTGTAGTAAGTCTCTTCTCTACTGTGCAGGTTTGGGGTCCAATGCCTTGTTGTATACAAGTTGCTATTTATGTATTGTGTTCCTATCCACAAAGCCTCTGTGCACTTTGCCAATATTTTACCCGTGTAACTAACAGATCTATATAGAtagatatctatctatatatctaattGCAACAGAGACATAGGACACATAGTGTctgaaatgccaccctattccctatatagtgcaccagtccggctctggcctaaagtagtgcactatatagggaaaagggcaTCATCTTGGACATAACCATGGCTGCCAGTCAGTTTTTACTTTAACCAGGCCAGCTTGTCATTGGCTACGACGTGACAATGTTGGGTACAAGGCAGTGGTGTAGCGTGCAGAAACAGTCATGTTCTCGGGCTAATGATGCTGTGTACCTACCCGAAGAGGATATCCGTTGAGGAAAGGGTCTAGCAGGGTTGCAAAATCCAACTTTCCCAGAAATTCCATTTGGATGATTTTGATATTGTTCCTGTGAGATGACAATGAACTGAGGTAGGCTATGGGCTGACCGTGGTGGTTTTAACAAGTTGTGTTTTCTTTACCTCTTGCCTACATTTCcctgtgttcaggtgtgtgttgtGGGGTGTAGAAAGCATTTGTCAGCTACTGATCTAGACACTAGTATTAAAAGATGTGCTATATAATGTATCCTATGTAAGAGTTGCTATGTGGTTTAAGCACCCAAATGGAAACCTGAGTTAAGTACTTCAAGGGGGGAAAAAACTAGCACGTTGGAGCCTTTGGCTTTTTTGTGTTTATTTATGAAAGTGTAGTGTGACTGTGGCCACAAGGTGTCCACGATGAGTCAGTAATACGTTTACCGACAACGATCATTTGTAGCCTGCCCTGCATATAACTGGACATTACCATGCTGAAGCCTTCATAACCACTACTACAGCGACGTATGTATTCTGATCTGTCCATGTATCATCATGATGACTTTGGATATGTCATTTTCCTCTTGGTTTGAATGTACATTGTGCAGCATCTGTGTTCTGTACCCGTATTCATGAAGTGTCAGTTTAGCCTTTtcgatcataatgaataagaggggGATCTGATGTCAGTACTAGTGCTTCATGACAATATGCTCTGTTCTTCTCTTGTTTAGCAAAATGATGTAAGGAAGTCATAAGAATCATAATGCACATCTCACTGGTCTCAAGTCACTTCCTTTCCCAATCTACTGTACTTTCCGTCACCTGCACTGAACGAGCTGGATAGGTAAAAGCTACTTCCTGGTAGGCACATTGTTTTCCCAGACTTATTCCACTTAAAAAAATAACTGCTATTTTTGATTAATAAAAGTTTAAATTCGCTATTCAGAAAAGTCCCTCTCCCACTAGAACAGTGTTGCCCAAACTCTGTCATTGGgtccccaaggggtgcacatttagttttttgcactgcacagctgattcaaataataaacAAATCATTAAGCTTTGATTATTTAATCTGCTGTGTAGTGCaggggcaaaaaccaaaacatacccaggaccgagtttgggaaacgctgcgcAAGAATGAACAATATTGATAGGACAGGCGCTTGTCAGTCACAATGTGAGCGATGACAGGGAAACACTGCTGGTTTGGCAATCTGCTGTCTGTCTCACCTCCAGGTACCTGTGGGATTTGTGTGCGCTGTGGTTGATTTGAAGTCAAATTTCTTTACAGATAACAAGATGCGCCTTCATCGTGGTAACGATGAGTCGAAATCCACTGAGCCTAATTATTGTTTTCTTGCCAATTTTATTTTGTGTGTTTCCTATAGCCAGCCACGGAATCGTGATGCATAGGCTATTTACCGTGCTTTGATTGACGACCGAACAGCAAATGTTGACGTGTCAAACTGACTGAATAAAAGTGATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126827 lncRNA downstream 7633 34814812 ~ 34815387 (-) True G1858520
TU2126877 lncRNA downstream 11429 34811316 ~ 34811591 (-) True G1858569
TU2126760 lncRNA downstream 172907 34649659 ~ 34650113 (-) True G1858456
TU2126759 lncRNA downstream 173672 34648788 ~ 34649348 (-) True G1858455
TU2126471 lncRNA downstream 536814 34201685 ~ 34286206 (-) True G1858185
TU2126885 lncRNA upstream 6310 34843945 ~ 34844171 (-) True G1858577
TU2126889 lncRNA upstream 14239 34851874 ~ 34852131 (-) True G1858581
TU2126891 lncRNA upstream 16530 34854165 ~ 34854400 (-) True G1858583
TU2126895 lncRNA upstream 20540 34858175 ~ 34858382 (-) True G1858587
TU2126896 lncRNA upstream 21278 34858913 ~ 34859140 (-) True G1858588
XM_036960311.1 mRNA downstream 12902 34794341 ~ 34810118 (-) True LOC110502637
XM_036960308.1 mRNA downstream 249959 34548636 ~ 34573061 (-) True anxa11a
XR_005039172.1 mRNA downstream 287372 34474361 ~ 34535648 (-) False dlg5a
XM_021580853.2 mRNA upstream 77867 34915502 ~ 34928362 (-) False LOC110502644
XM_036960316.1 mRNA upstream 77867 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA upstream 77867 34915502 ~ 34929983 (-) False LOC110502644
XM_036960317.1 mRNA upstream 77867 34915502 ~ 34936389 (-) True LOC110502644
XM_021580856.2 mRNA upstream 215261 35052896 ~ 35059019 (-) True LOC110502648
TU2126826 other downstream 1455 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 635150 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1221179 33596158 ~ 33601841 (-) True LOC110502621
TU2124285 other downstream 2176880 32637425 ~ 32646140 (-) False G1856217
TU2124286 other downstream 2176880 32637425 ~ 32646140 (-) True G1856217
TU2126883 other upstream 2265 34839900 ~ 34841662 (-) True G1858575
TU2126950 other upstream 99054 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 405479 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1116585 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1611196 36448831 ~ 36451459 (-) True G1860462

Expression Profile