RNA id: XM_021580853.2


Basic Information

Item Value
RNA id XM_021580853.2
length 2851
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110502644
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34915502 ~ 34936389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCATAGCATAAAGTTTTATTTCTGGACAACTTTAATAACACATATTTTTAAGTTAATCTGAAACTTTACAGTTCAGTAAAGGAATCTAAGAAACGTATAGTTGGCTAGAGTTCCACACTGCCCCTGGGGAACTAGAGTTTGACCGCTATGCAGTCTACAGTGTGTGCTATGTAATTTAAAACAAACAGGGAGATAGCGTCGAGAGGGCCCACCCCATGTTTCCTCACGTCTGTCCTCTGACAGGACAAGGTGGTACTCCCTTCCAAAAAGGAGTGGCAATATTGGTTAGAACTTTAGTTTCCTCTGCTGCTCTCAAATGGCAGGAATGTTGCCTGGGTGGTGGAAGGTACACAGACAAACTGGTACTACGTCAATCTGCTGGATATACTTGAATGATCTAGTTTGGTAACAGGACATACTTATTGGGATTCTACAGTTACGATGAGGCGTCAGGTTTATGGGTGACTGACTCTGCTGTGGTGGAATCTAGAGGCAGAAATCTTCAAAGTGCCAGAAAGACAGACTGTGTCTGGACCCAGGTCGTCACTACTGTACTTCTGCTGCTGCTCTCACTAAACTACCAAGACATGGTCCTCTGGAGTctactccccatctccctctccttggTGTCTCTCATTGGCACATGGGTGACGTATGGCCTGGCATACAGCTATGACCATGTGTGTTCCCTCAACAACTGGGCCCCCGGGAACCCCTGCGGAAACAATACAACTATGGCATGTTGTCAAGTTCCCACCATAAGCACGAGTGGAACAAGCTCACCAGAAAACTCTTTGTTCACAGCCACCATCAATGCTGCTTCATTTCTGTTTATGGTGTTCTGTATCTTCCACCATGCTCACATCTTGGAGAGGAACAGTGTCCACTCCATGCTCAGTAGAATCGCCCTGGTGTTTGGTGGAGTGGCAGCCATCGGGGCCTTCGTGGCTGGGAACTGCAATcccgAGTACCTAACACTGGCCCATTACCTGGGGGCTGCGGTAAGCTTCCTGTGTATCTGTTTCTACAGCCTGCTCCTCACGGTGCTCACAGGGAAGTGTGTTCTGACCCGGATGGAGTGGTTCCTCTACCCAGCACGGGTCATGTCTACTGCGGTCCAAATCATTGTCACTATTGGCTATGCAATCTTGTTTGTACAGGAGGAATACGTGTACAAGCACTCAGCGGCCGTGTTTGAGTGGATACTGAGCGTCAACCTGGAGCTGTTTGAGCTCAGCTTCGCTGTTGAGTtctgtttcttctcctcctccatgttgtgtACACTGCTGGGGAAGAAAGATGAGGAGAAGCCTATCCTTCTGGCCTGAGAAGATGAGATGCTACTGGGCTGGGGGACCTACTGTAAGAGACACTTGGGTCATGTGATGCATGAAATGGAAGAAAACGTTCCAAAATGGAGAGACCAGCTGGACTTGTCCATTAAGTGTCGGTTAAAAAAAATGTCACGTTGTGCCCTAATGAAATAACCCAGTAGTTTACAAACTTTTCTATGTTGTGACTGATCTAAAGCTTGTGGAATTGGACCAACCAAGTAAAGGGAACAATTGTTTGTAACCGGTTCTGGCTGCGACCAAAAAATGAATCAGCTGAATCGGCCACGACCCACCGTTTGGGGAAACACTGACCTAGTGGCATCAAAGATGGGGATCAAACATAACCTTTGATCTCATTCTCAGACCAAGTCTTATTATTGAGGAtgggttttaattttttttaatcagGGCTGAAATCATTTTTCTTATGCAAGCCCCTAAATACAAAACGAAAGATGAGTTATTCGGGTCACAACAAATCTAAGTATTTCTGAAAGCTTTGGAAAAGTAAAACTGTCCATCCTACAACTTTCATAGCCACTGATGGACCAATACCAGGACACCTTAGCATTTGAGTAGTAGTCACTGTAAGTACTAAAATCATTATTTCTATTCTCATGTTCTGAATTGATCAAGGTGAAATGTTCTATTTTATGGGCCATGTAGAATTGTGAATGATGTTATTCTTTCAATGTTTTGTCTATATGTCTAAAACTTCGGGGCATTACTATGCCAGGCAACAACAGAAAAAAGttgtataaaaaaatgtaactgTCTGCAAAGTGAAGTATTGAGGTGTAATGTTGTGATGGAATCTGAGGCCAGTAATCCCTCGACAGCTTTAACATTCAAATGATGATCAAGTCATTTGGTTATTGGTGTGGAGATTAGAAGCCAGTGATGATTCTAAACCTTTGTGATAGAACAGGTGATTTAATGTGAAGGAGGCAGGAAATTCAGGCAGGTGTGGTGGTTCAGATTTATTAATAGAGGCCTCTGTCTTTTGTGATAGATCATTCTGGAAAGCTTTTTGATGGCAGAACAGCTGGTTGTACAAGTTTTACTGCATACATGGCAGATGAGAGAAGAACCAGAACAAAAGCAATCCTTCATCCAGAAACAATCTAACTGAAAATGTTATGAACAGAACAAATTTCCTAGCAAGGCATTATACTTTGTATTTGTTCCTTTCTTCTTATGTATCGTTCTCATTTTCTACTGCTTTCCTACAGTGTTCCTATTCAGGCATTTGTGCAACGATGATTCAGACTTGTTTACAACAACAATATATCATGGACTATATAGTTACATCTTAACAAAGTggtacataaataaataaatatataacgaATTAGTGACAAACTGATGTTTACTAAAAgtagaaataaataaaagcatttAGCCTAATTCAGTATGAAAATATCAACTTGGAAGGTTTCCTACTCTTAATTTTTGGAGGCATTTCTTTTGCCAAGCGTAATTGAGTAATAAAACGTGTGTAAGATCAAATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126932 lncRNA downstream 5853 34909450 ~ 34909649 (-) True G1858620
TU2126823 lncRNA downstream 6366 34906557 ~ 34909136 (-) True G1858516
TU2126915 lncRNA downstream 34881 34880319 ~ 34880621 (-) True G1858604
TU2126914 lncRNA downstream 35400 34879712 ~ 34880102 (-) True G1858603
TU2126912 lncRNA downstream 36451 34878679 ~ 34879051 (-) False G1858602
TU2126943 lncRNA upstream 809 34929171 ~ 34929514 (-) True G1858630
TU2126970 lncRNA upstream 49848 34978210 ~ 34979783 (-) True G1858656
TU2127033 lncRNA upstream 56157 34984519 ~ 34984974 (-) True G1858717
TU2127044 lncRNA upstream 72677 35001039 ~ 35004369 (-) True G1858728
TU2127309 lncRNA upstream 195672 35124034 ~ 35124485 (-) True G1858966
XM_021580850.2 mRNA downstream 77861 34823020 ~ 34837641 (-) True slc25a16
XM_021580849.2 mRNA downstream 77867 34823020 ~ 34837635 (-) False slc25a16
XM_036960311.1 mRNA downstream 105384 34794341 ~ 34810118 (-) True LOC110502637
XM_036960308.1 mRNA downstream 342441 34548636 ~ 34573061 (-) True anxa11a
XM_021580821.2 mRNA downstream 379854 34479118 ~ 34535648 (-) False dlg5a
XM_021580856.2 mRNA upstream 124534 35052896 ~ 35059019 (-) True LOC110502648
XM_036959900.1 mRNA upstream 136984 35065346 ~ 35066105 (-) True LOC110503106
XM_021580859.2 mRNA upstream 267831 35196193 ~ 35222086 (-) False LOC110502651
XR_005039178.1 mRNA upstream 267831 35196193 ~ 35222086 (-) True LOC110502651
XM_021580860.2 mRNA upstream 398328 35326690 ~ 35338242 (-) False LOC110502652
TU2126883 other downstream 73840 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 93937 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 727632 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1313661 33596158 ~ 33601841 (-) True LOC110502621
TU2124285 other downstream 2269362 32637425 ~ 32646140 (-) False G1856217
TU2126950 other upstream 8327 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 314752 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1025858 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1520469 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2406665 37335027 ~ 37335414 (-) True G1861368

Expression Profile