Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051920 |
| length | 597 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 6 |
| gene id | XLOC_026656 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 40056485 ~ 40136743 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007015 | actin filament organization | biological_process |
| GO:0007605 | sensory perception of sound | biological_process |
| GO:0030050 | vesicle transport along actin filament | biological_process |
| GO:0016459 | myosin complex | cellular_component |
| GO:0098858 | actin-based cell projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0031982 | vesicle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000146 | microfilament motor activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003774 | motor activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0030898 | actin-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080425-2 | Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to act upstream of or within sensory perception of sound. Predicted to be located in cytoskeleton. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; actin-based cell projection; and vesicle. Is expressed in midbrain hindbrain boundary neural plate; presumptive rhombomere 3; and presumptive rhombomere 5. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 3 and sensorineural hearing loss. Orthologous to human MYO15A (myosin XVA). |
| ensembl_id | ENSDART00000185292 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00051913 | lncRNA | downstream | 110497 | 39945865 ~ 39951527 (-) | True | XLOC_026653 |
| TCONS_00051912 | lncRNA | downstream | 365966 | 39692358 ~ 39696058 (-) | True | XLOC_026652 |
| TCONS_00053080 | lncRNA | downstream | 498723 | 39561784 ~ 39563301 (-) | True | XLOC_026648 |
| TCONS_00051904 | lncRNA | downstream | 607121 | 39371873 ~ 39454903 (-) | True | XLOC_026646 |
| TCONS_00052480 | lncRNA | downstream | 948477 | 39112314 ~ 39113547 (-) | True | XLOC_026637 |
| TCONS_00053081 | lncRNA | upstream | 111786 | 40180136 ~ 40181654 (-) | True | XLOC_026659 |
| TCONS_00051928 | lncRNA | upstream | 183066 | 40251416 ~ 40251945 (-) | True | XLOC_026662 |
| TCONS_00053082 | lncRNA | upstream | 327713 | 40396063 ~ 40405249 (-) | False | XLOC_026666 |
| TCONS_00051934 | lncRNA | upstream | 327713 | 40396063 ~ 40405386 (-) | False | XLOC_026666 |
| TCONS_00053083 | lncRNA | upstream | 334706 | 40403056 ~ 40405034 (-) | True | XLOC_026666 |
| TCONS_00051917 | mRNA | downstream | 7275 | 40000013 ~ 40054749 (-) | False | XLOC_026655 |
| TCONS_00051918 | mRNA | downstream | 7286 | 40000312 ~ 40054738 (-) | True | XLOC_026655 |
| TCONS_00051916 | mRNA | downstream | 7409 | 39975249 ~ 40054615 (-) | False | XLOC_026655 |
| TCONS_00051915 | mRNA | downstream | 10599 | 39970355 ~ 40051425 (-) | False | XLOC_026655 |
| TCONS_00051910 | mRNA | downstream | 365958 | 39691525 ~ 39696066 (-) | False | XLOC_026652 |
| TCONS_00051922 | mRNA | upstream | 85469 | 40153819 ~ 40162867 (-) | False | XLOC_026658 |
| TCONS_00051923 | mRNA | upstream | 85891 | 40154241 ~ 40162843 (-) | False | XLOC_026658 |
| TCONS_00051925 | mRNA | upstream | 116903 | 40185253 ~ 40202607 (-) | True | XLOC_026660 |
| TCONS_00051926 | mRNA | upstream | 137681 | 40206031 ~ 40232615 (-) | True | XLOC_026661 |
| TCONS_00051927 | mRNA | upstream | 166938 | 40235288 ~ 40254634 (-) | False | XLOC_026662 |
| TCONS_00051914 | other | downstream | 104550 | 39957358 ~ 39957474 (-) | True | XLOC_026654 |
| TCONS_00051909 | other | downstream | 412462 | 39649445 ~ 39649562 (-) | True | XLOC_026651 |
| TCONS_00051900 | other | downstream | 802347 | 39238096 ~ 39259677 (-) | False | XLOC_026643 |
| TCONS_00051892 | other | downstream | 1143307 | 38913378 ~ 38918717 (-) | False | XLOC_026635 |
| TCONS_00051881 | other | downstream | 2288224 | 37767285 ~ 37773800 (-) | False | XLOC_026629 |
| TCONS_00051921 | other | upstream | 20335 | 40088685 ~ 40088801 (-) | True | XLOC_026657 |
| TCONS_00051924 | other | upstream | 85944 | 40154294 ~ 40158687 (-) | True | XLOC_026658 |
| TCONS_00051938 | other | upstream | 458529 | 40526879 ~ 40529778 (-) | False | XLOC_026667 |
| TCONS_00051939 | other | upstream | 458532 | 40526882 ~ 40529779 (-) | False | XLOC_026667 |
| TCONS_00051964 | other | upstream | 1243672 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
