RNA id: XM_036960355.1


Basic Information

Item Value
RNA id XM_036960355.1
length 3001
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110502652
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35326690 ~ 35342828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGTTTCCTCTATCTTGTATGGGTGTTATTTTTACCTTTTTTTCCAAAcctgtccagttggtggtggtaatacaCCTTTTTGGGTTGTAGTCTGCCATAAAACCCACAGAAGAAGAAGTAGGAGAAAGAAGCTAAATGCTTACGGAGGAGTATGGAAGGAAATAAGGAAGAAAGTAAGGAAGAAAGTGGAGAATATTAGGAATAAACATGGAGTGGGGGATTACACAGGCCTTCTGGAAAATCTGGTGAAGGAGAAGATGATGAACAAGAAAAAAAGGAGCGATATAGAATATGTTTTGAGTGAATATGGAATGGAGGATCGCCCAGAACTTTTGGAAGAGCTTAAGGAGGAAATGGAACATGATGAGATAAAACAAGGATGTCTGGAGATCTGGACATTAACATCAAGGAGCCACGATGGGACCAGAGCACATTCATGGGCCGCGCCCAGCACTTCTTCTTCGTCACTGACCCCAGGAACATTCTGAAGTCCTCTGAGACCCTGGAGGATGCACGGGTTACTGTGGAGAAATACAGGTTAGGAGTGGTGAAGCCAGGTCTGACAGAAGATGAGCTGTGGAGAGCCAAGTACATCTATGACTCTGCCTTCCACCCTGACACCGGCGAAAAGATGGTGGTGGGACGCATGTCTGCCCAGGTCCCCATGAACATGACCATCACCGGATGCATGCTCACATTCTACAGGACGACTCCAGCCGTTGTGTTCTGGCAGTGGGTGAACCAGTCCTTTAACGCTGTGGTCAACTACAGCAACCGCAGTGGAGACTCTGCCCTCACCACCAATCAGCTGGCTGCAGCGTACATCAGTGCCACCACAGGAGCTGTAGTCACAGCCCTGGGACTCAAGTCTCTAGCCAAGCGCCTTCCAGCCGTCATGAGCCGGTTCGTCCCTTTCTTTGCTGTAGCGGCTGCCAACTGTATCAACATCCCCTTCATGAGGCAGAGGGAGCTGAAGTACGGCATTCCAGTGACAGACGAGGAAGGGAACCGGTTAGGAGAGTCAGTCACCGCTGCCAAGTCAGGCATCATCCAGGTGGTGGTGTCCAGGATTGGCATGGCTGTGCCAGATATGGCTATCCCACCTGTGATAATGAACGCCCTGGAGAAGAAAGCCTTTATGAAGCGGTTCCCAGTCCTAAACGCCCCAGTACAGGTGGGACTGGTGGGTCTGTGTCTGGTGTTTGCAACTCCTCTGTGCTGTGCCCTCTTCCCACAGAAGAGttctATGGCAGTGAGCAGCCTGGAGACAGATCTTCAGGAGAGTATACTACATAGCAGTCCCCACACTACTACTGTCTTCTTCAACAAAGGCCTTTAGGACCACACAATAACACCCACCATGCATAATCCCCATCTGCTGGTTGGACCTTGCTACTACAGCTCAGTGAGAACAACTGTAAGGCCAAAGATAATATTATATTTAtgcatattttttatttaccTGTTTGTTTGATGTTCTAGgcttttttgttgttttatttgggAGAGGTGATAGTGAGGGGTGCGTCTCAGTCCTACAAAGTTGCTTCCTTGTCTGAAATGATTGGTGAAAGCCTACCAGTCAAATTTTTCTGATTGTACACtgaaatataaaagcaacatgcaaaaTTTCAACCATTTgactgagttaaagttcatataaggaaatcagtcaattgaaataaataaattaggccctaatctatggatttcacatgactgggagcaaggcccacccactggtgagccaggcccagccaattagaATTTGTTTTCCCCCACATCCTCagatgtccgggtggctggtctcagaggatcccacaggtgaagatgCCTGATGTGGAGCTCCtgtgctggcgtggttacacgtggtctgcggttgtgaggctggttggacgtactgtcaaattctctataACTATGTTggtggtggcttatggtagagaaattaccttttcaattctctgtcaacagctctggtggacattcctgcagatattttatttcagctcatgggaccaacactttacatattgtgttttatatttttgttcagtatagatgcaggaaaggagacaaggggaGAAAGCCTCTTCGAAGTAATGAAACGCATGCGAGCGTAGTGTGACATATATAGTGTGACACATCTTATAATCCTACATTGACAAACAGACTATGGTTTGATTTTATTTCTATTTTGTGCGTTTATCCTCCCTGGGGTTGTTTAATTACTGAATGTTACTGAATGACAAATTCTATCAACTCACCCCAAACTAGATCACCCCTCGTTTTCAATCCCAGAGAGATTTTTTTCTCCCCAAGGTGTATTTGTTTTTTCCAATGTGTTTGAGATCGTACCCTTTTAAGCCGTGTACACTGAAACCATTCATGACTTGGAATTAGAAAATTGTTTAATTGAATCTGTTAGATATCCACTCCCTCAAATTGGCTCTACTGTAGTCTGTAGTAAAATACAACAGTTGGTTTATGATAACAATAAAGACTGGCTTGCTATTAAATTCCTTTTTGTGTCTGCCAGGGTTTTGTTTATCATTGTAAAACCTATTGCTtcagtgtgccctaatgaacattaCCCAGTTGACGAGCAAAGCTTCCCTCTCTCACCACTGCCCTTGGAAATGTACTTACACACACTGTCCCAACAGATAACCTTATCAACCCCTCTCACCCTAGTAACCCTGTCTGTTTTGTTACGAAGAAAACCTTTAGAGATGCTATGACACTGCGTGGGCACTCCTTACTGAGGTTTCAATAAGCACATTCCTAGTTGCACTGATGACAATGATATGCCAGCAGAAAGGTTTATCTAGGATAGAATCTAGGCATAATGTTTCCGCCCCATATCACGGTCtttcggcaggtagcctagtggctaagagcattgggccagtaaccgaaaggtcgctggttcaaatccccggactgactaggtgaaaaatctgccgatgtgtccttgagcaagtttcttaaccctaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2127443 lncRNA downstream 4091 35321433 ~ 35322599 (-) True G1859093
TU2127427 lncRNA downstream 29026 35297351 ~ 35297664 (-) True G1859077
TU2127407 lncRNA downstream 52325 35270032 ~ 35274365 (-) True G1859059
TU2127385 lncRNA downstream 82315 35243629 ~ 35244375 (-) False G1859039
TU2127476 lncRNA upstream 20241 35363069 ~ 35363284 (-) True G1859125
TU2127495 lncRNA upstream 35277 35378105 ~ 35378307 (-) True G1859144
TU2128169 lncRNA upstream 58007 35400835 ~ 35404770 (-) False LOC110502653
TU2128171 lncRNA upstream 65679 35408507 ~ 35408728 (-) True G1859781
TU2128178 lncRNA upstream 74888 35417716 ~ 35418034 (-) True G1859788
XM_021580859.2 mRNA downstream 104604 35196193 ~ 35222086 (-) False LOC110502651
XR_005039178.1 mRNA downstream 104604 35196193 ~ 35222086 (-) True LOC110502651
XM_036959900.1 mRNA downstream 260585 35065346 ~ 35066105 (-) True LOC110503106
XM_021580856.2 mRNA downstream 267671 35052896 ~ 35059019 (-) True LOC110502648
XM_036960317.1 mRNA downstream 390301 34915502 ~ 34936389 (-) True LOC110502644
XM_036960330.1 mRNA upstream 58005 35400833 ~ 35431674 (-) False LOC110502653
XM_021580862.2 mRNA upstream 58005 35400833 ~ 35500950 (-) False LOC110502653
XM_036960331.1 mRNA upstream 58005 35400833 ~ 35500950 (-) False LOC110502653
XM_036960332.1 mRNA upstream 58005 35400833 ~ 35500950 (-) False LOC110502653
XM_036960333.1 mRNA upstream 58005 35400833 ~ 35500950 (-) False LOC110502653
TU2127381 other downstream 83101 35243114 ~ 35243589 (-) True G1859038
TU2126950 other downstream 357829 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 485028 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 505125 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 1138820 34177057 ~ 34187870 (-) False kcnma1a
TU2128534 other upstream 611392 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1106003 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 1992199 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 2813921 38156749 ~ 38157209 (-) True G1862272
TU2132816 other upstream 4106569 39449397 ~ 39453415 (-) True G1864033

Expression Profile