RNA id: XM_036960335.1


Basic Information

Item Value
RNA id XM_036960335.1
length 6649
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110503108
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35545574 ~ 35600621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACACCTCTTGTTTGTCAGGCTGCCACAGTTTGCTGTGGGTGAAAGTCCACTGTAGATTACAAACACACCGCATTGGGATTTTTTTACACCGAACACCGTATCTTCAAGGAATCCCCCCATAATTTCAGATGGAACCTGCAGCAAGGAGATGAGCCAGCTGGTTCAGGCTTcagcacagagcgagagagacttcCAGTGTCTGTTGGCGTGTATGTGGTAGAgagtatatatgtatgtgtgtgtgtgtctgccgaGAGGAGAGAAGACTGCCTTCCAGCGGTGTGTGTGGGAGCAATCGTGTTTCTTTGCTTGAgctggtgtgagtgtgtgagttcTTTACTCTGAATAGTAGAAGAATGGCAGCTCGctagtgtgtgtttatgtgaatgcatgtgcatgagtgtgtgttttCCCGAGTGAGTGTGTTGTTTCCACCTCTCTGAGGAGTAGTAGGAGGGCAGCTCTCTCCCcctggctgggtgtgtgtgtgtgtgtgtgtggagatggcagtgtgtgtgtgtactacccTGCCCGCACTGCTCCTGCTCCTGggctgcggtgtgtgtgtgacagtgggaTACCCATTCAGACCCCCCATAGACCTGGATGTCACCCCCAGAATCACCATAACTACCAGcgGTCTGTTGGGCTGCAGACGTTTCCAGTCCTCAGTAGTGAACTACAGTACTCTGCTACTAGAGGAGGACAAGGGTCTTCTCTATGTGGGGGCCCGGGGGGCCGCGTTCTCTCTCAACGCCACAGACATCTCAGACAGCACAGCTCGCACTATTGAATGGGAAGCCTCGACGGAGCAAAAACAGCAGTGTCTGAGCAAAGGGAAAGACAATAAGACAGAGTGTTATAACCAcatcaggtttctccagagatttAACTCAACTCATCTCTACATGTGTGGGACTTACGCCTTCAGACCTCTCTGTGCATACATAGATGAGGGGAGGTTTAAAGTATCATCTGAGTTTGAGGAGGGCCGAGAGAAGTGTCCATATGGACCTGCTACAGGCTACACTGGCCTCATCGTAGACCAGCAGATGTACACAGCGTCTCAGTATGAGTTCCGGGGCTTCCCGGATGTCCGACGTAACTTCCCCTCCCCCACGGTGAGGACAGAGGAGGCACCCACACGCTGGTTACATGAGGCTGACTTTGTGGGCAGTGCCCtggtgagggagagtgagggcaGTACCACCGGAGATGACGATAAAATCTATTACTTCTTTACTGAGAAGAGCCAGGAGCAGACACCATACTACAGCCACATTAGAGTGGCACGGGTTGGACGAGTCTGTAAGGGAGACCGAGGAGGTCTTTTGACCCTCCAGAAGAGGTGGACATCGTTCCTGAAGGCCAGACTGGTGTGTTCCCTGCCGGAATATGACTTCCACTTCAACGTGTTGAGGAGTGTGTACACGCTGTCGGGGGACACACCTCACGACACGCTGTTCTACGGCGTCTTTGGTCTCGAGTGgAAGAACGTGAAGGCGTCGGCAGTGTGCCAGTTTTCTCTGTCTGAGCTCCAGCGGGTCTTTGATGGGCCCTACATAGAGAACCAGGACTCTGGAGCCAAATGGAGCGAGTACACTGGCAAGGTCCCTGACCCACGACCTGGATCATGTATAACAGACCAGTTGAGATCCAGAGGTATCAACTCCTCCACCTCCTTGCCAGACGACGTGTTGAACTTTGTGAGGAGACACCCTCTGATGTCCCAGCAAGTCATGTCTACAGAGCAGCGCCCTCTGTTGTTCAGGAGGACCACAGACTACACCCAGCTGGCGGCTCACAGGGTGGAGGGGCTGGACGGGCAGAACTACCATGTACTGTTCATGGGCACAGACGATGGCTGGCTGCACAGGGCTGTGGAGGTCAAGGGCCATCTACACATCATAGAGGAGCTGCAGCTGTTTGACCAACCACAGCCTGTGGATAGCCTGgtcatctcacacacacagatGAGTGTGTATGTAGGTTCTCCCTCTGGTGTGGTCCAGCTGCCTCTCTCCACCTGTAGCAGGTACACCTCCTGTTACGACTGTGTCTTCTCCCGGGACCCTTACTGTGGCTGGGATGGACAGGACTGTGTGGACATCACAGCACAgactgacaggtCTAACCTGAGTCAGGACGTCCTGTATGGGAACAGAGGATGTGACAGCGACACAGCAGACGAGCTAGTCCAGCACCGGAACCGGTCTGTGATGGTGGGAGATGACGTGCTGCTCCAGTGTGAACTCAGCTCCAACCTGGCAACCCCAGTGTGGACTCTGGGTGGGTCAGAGCTGCAGGGCTACGGCCTGGACTCCGGCTTCAGAGTGGGAAATGATGGCCTCCTGGTCATTGAGTCCCGACCTGAACAGAGCGGCGAGTACACCTGCCACGCCCTTGAGAATGGCATCCGGGTTGCCGTGGTTACGTACTCTGTGACAGTTCGTTTAGACATGCCCCAACCCCGTCCCCCGCCCATGGACCCCCCCAAGGAAGACTACTCCTACTACACCCCCCGGGACTCTGACTCATCCAGCCTtgacccccctcctccacccagcGCACCCCCCTCCTCAGAGAGGCCCCTGCTACCCCCTCCCCCGGCCCATCTCCCCCCCACCTCGGAGCTGCTCTCCCCCAGGAGCATGGAGGCTATGTACCTGTCCATGATCACCATCCTAGGGGGtctgtgtctggttctcacaGTGGTTCTCCTCTACGTGGGCTTCTGTCTTCGGGGCGGCCACAGGGGGAAGTACTCTCTCCGCGCTGCCGCCGCTGCATCTGCCAATCACACAAACAGGAAGAAAAAACACAGGAAGCAGCATCAGAAACGCCACAGTAGCTCCACCCACCTAGAGCTCAAGACCATCTCCAGCCACTGTAATGGGAATGGGATCTGTAATGGTAACGGTGTCTCCAAACAACCGGGGGACGGTGACGCGCATGAAGGGGGCTTCCTCCAGATCGTCCCTGGGGAGGGCCAGTCCTCCCCCAACAAGGACCCCCCACCCcctgcccctcctctccccccgccTCCTCAGACACCCCACTCTGCCCTCAACCAATCAGAGTGTGACTTGCAAGACTTCCCCAGCCCCAACGGCCTATCGGCGACGTTACCCAGCGTCTTGCGGAGGATGCACGGTAACAGCTATGTGTTGTTAAGACAGAGTGACGCAGACAGCAGTTCTCCTCTCTGCTACTCCTTCACTGAGGAACTCAACAGGATCCTAGAGAAGAGGAAGCACACACAGCTGTTGCCCAAACCGGACGAGAGCTCTGTGTAGTAGAGGGAATCTGTGTCAGGGAGGTAGCTCCCCCTGTGGTGGGAGGACTGAACTGGGACATTAATATAGGCCATTTAGCagatccaaagcgacttacatcAGTGAGTACATACATTTTGTATTGGTGGCCCCAGCGACAATTGAACCTATGACTCGGTCATTACATGCTGAAGGGCCTGTTGTAAGGCTCTGACTTTATCTCCTTCTCCAAGTCAAGAATAGTAATACTCATCGGGAGGAACTTGAGAAACTGGCCCCAAACCGAGGGGTGCAGAGATAATTTGTGGATGACCCATGCTGCTCACAGAGTAAATGGACTCTAGGCAAGTCTATATAACAGCAGCTAGCCTGATCTGAATTATGAGAGGGAGATAGCCTGCCATTTGTCctacttaaaggcccagtgcagtcgaaatgcttttttcctgtgttttgtagAATATTGTACAACAGTTGATGAAAcgaacactgtaaaagtgtgatttttttaaatcagtGTTATTCCCTAATATTTGCTAGTTGGAAATACAGTCGTCTAATCAACCTGTTTGCATTGGCGGGAGTTTCGGCTTGCCTGGTGACACCCTGGTAAATTAGTTAAtggaccaataacaaagagagtttctaacctctctgccaataacagctagttttaagttttcccctccccacacagaccactcccagacagtccattttgtccattttaaggtaaggtacttaattgttacctagAAATGATTGGATATAGATATAAAAACGGCTGCAATGGGTCTTTTTTAAAAGTTTTTGCACCACTGAAAATGGGCACACATCTAATGAGTCGCTTGCATGTGTGTTGGAATAACAACTATGTTTCAAAAGAGGATATTTCTGTACAATATTCAACCTTCCTAGGAGCTATTCTTGTATCTCTATCTCCTGTTTGACACCCAAAGGCATGGGTTACAGTGAGGACTCACGTAAGATACGCCTCtctaggagagacagagagaacctaCCTCAGCTCTGCAAAACTTAGCAGGCTAGCGCTAACCCAGCTCAAGTCAATACGGCTCAGTCTGGATCAATACAAGACTAGCCCTGGAGGGAGTGATTCAGGGAGCAGGCCTCAGATCTCAGCCCCAGAATAAGGTTCCTCGCTGGGCAGGACACGAGTGGCAGGGACCCTGTGAAGTCTCAACACAGACCATGGTAacaaggaggaaaaggaggaagaaGAATAGGCTCATATGAAGTTGTTGTGAATTGTGACAACGGCCTTGAATTGGCTTGTGTTTTAAAATGGAGGCAGATGTCCAAAGAAGGGACCAGATGTGTTGTAATGATGGTGTGCTCTACACCTTTTTAGCAGGTTTCATATTAGAACATTGAGGGGAAAAGTGTATTTGTTTTTATTCTTAGAGGTTCTCATTGTAAATTATCTTTATTGATTACAATGGTAACACAAACTGTAATAACCACATTCAAGTATTATTATTAACATATAGCGACGTCTAACCCAAGACAGAGAGAGTATCCAATTAAAATACCCTTTGAACATTATATTTGTGATAGGAAATATGACAGTATTAACAGTTTTTATGCACTTTCAGTGCCATTTGCTTCAGACATTCCTTGGTTATTATGTACTCAAATCAATGGACACTACAAGCACATCAGGACTATGGGAGATTCAACATCATCATACCCTGTCAAGAGACAACACCATCAACTGAGTTGGAGCTAATGGATTAGCAGCACCCCTACACTACTGACTCTCTTTCTCCTAACCAACTCCAACGAATGTGTCTGAACTGGGGTTGGCAAAATTCCCAGTTCTGAACTCATCACAGCTCAGCCACAGAGGATCAGACATCACTTCCGGTTCATGGCCATAACAACTTATAGGCTACACACCTGAGACCTGAGAGATGCTATCTAGTTTGGGGCCTGTCTGTTTCAAACAGATCTTGCTCCAGCCATTCTCAAATATGGTGTGATGTCTGGTACCGTGACATGAAGATCTTGCCAACTGGGAATAGTGTAGCTTCAAAATGTCAGGATAATGCCACCGTTTGGAATCAAACACAGCTCCAGTGCAATTGGAAGACAGCAATtataatccagagtgagtgaggAAAAAGTCAAATCCTCCCTTCTACAACCAGTTCACTGCTCTATCCCATCTTAACCTGAGAACTGGAGTTGATATGGATACCTCAGTAAGTAATATAGGTCATGGTACAGTACAACTACTCTCTGCAACCTGACCTGTGTTGTTCACCTCAAGATACAGGAGCAAACTGGGGAAAGAGGCATTTAATGGTCCTGGTCTTCACCTCAGACTACTCTGTCCTCTATAGCCCTCTCTGTAAAGATGACAAACTATCACAACATGGAAGCTTACTAATAGAATGGGGGACCATCATAAACTGTTGTCAGGTTTTAAAAGGACTGCACTATCAGTGCCACTACGTTCTTTGAAGAAAAACCTTTAAAAGGGGAAAAAAAGCCTTTATATTGTGATTTTGTACCAAGTTGCTCTTCTATTGCCGTTGTTGTTTTAAAGCCATTTGTAAGAGGCTCTGATGTGGGTCTCAGTCCATTAGTGTTGCACAAGTAGTCTAATAACACTGTTGAACAGGGGTCTCCAACTCTGGAGATCTATCTCCAACTCCTGGAGATCTATGAGTGGTGCAGGCTTTCGTTCCAGCCCAGCGCCAACACAGCTGATGCAACTTATTATGGTCCAGAGTCAGACTGAAGACCATGATGAATTGATTTTGTTTAGTAGGTATGTTAGTGATGGATTGAAGCAAAACCCTGCACATCCAGATGCTCTCCAGGGCCAGAGTTTGGGGAAACCTGTTGTAGAAGCATGGTAGGTTAGCCAACAGCATGATGAACAGAATATACCACCGTAACTATAAGGCTTAAATTCAAAAATAATAAAATGTGACATGATGAGACTGTTCtcagtcttgcccattcatctgGGTTTGTTTAGATAGTTTCTCACGGGTTGTTAAGCAACATCCACAGcgttctgtatttctctctctctcgctccatatactgtatctaccaatggtttctgtctgtctttctagctctctcgctttgtctcacacactctcttgctttatacagtatctctacccctttctctgtctgtgcctgtctctctccttatttttctccctccctctccatatttTTTTGTCACGTTATGAATAATATGTCCACACAACAAGATGTCCTCCTGCttcactaacactaacacattgAGTAGCATCTCACTGACTTCTGGTTCGTTTACATTTCATTTTGATGAGCTGAAATTCTAATAAACAATATGTTTCAACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2128198 lncRNA downstream 51672 35439710 ~ 35493902 (-) True G1859808
TU2128196 lncRNA downstream 109263 35436021 ~ 35436311 (-) True G1859806
TU2128170 lncRNA downstream 113924 35431359 ~ 35431650 (-) True LOC110502653
TU2128193 lncRNA downstream 114410 35430898 ~ 35431164 (-) True G1859803
TU2128187 lncRNA downstream 119847 35424119 ~ 35425727 (-) True G1859797
TU2128351 lncRNA upstream 54713 35655334 ~ 35655713 (-) True G1859957
TU2128358 lncRNA upstream 60638 35661259 ~ 35664833 (-) True G1859964
TU2128405 lncRNA upstream 132732 35733353 ~ 35735345 (-) True G1860010
TU2128509 lncRNA upstream 273505 35874126 ~ 35877813 (-) True G1860109
TU2128523 lncRNA upstream 353599 35954220 ~ 35955060 (-) False LOC110502661
XM_021580862.2 mRNA downstream 44624 35400833 ~ 35500950 (-) False LOC110502653
XM_036960331.1 mRNA downstream 44624 35400833 ~ 35500950 (-) False LOC110502653
XM_036960332.1 mRNA downstream 44624 35400833 ~ 35500950 (-) False LOC110502653
XM_036960333.1 mRNA downstream 44624 35400833 ~ 35500950 (-) False LOC110502653
XM_036960330.1 mRNA downstream 113900 35400833 ~ 35431674 (-) False LOC110502653
XM_021580872.2 mRNA upstream 363473 35964094 ~ 36014458 (-) False LOC110502661
XM_021580871.2 mRNA upstream 387215 35987836 ~ 36014458 (-) False LOC110502661
XM_021580874.2 mRNA upstream 1027887 36628508 ~ 36629750 (-) True marveld1
XM_036960375.1 mRNA upstream 1053530 36654151 ~ 36666245 (-) False LOC110502666
XM_036960376.1 mRNA upstream 1053530 36654151 ~ 36666245 (-) True LOC110502666
TU2127381 other downstream 301985 35243114 ~ 35243589 (-) True G1859038
TU2126950 other downstream 576713 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 703912 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 724009 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 1357704 34177057 ~ 34187870 (-) False kcnma1a
TU2128534 other upstream 353599 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 848210 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 1734406 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 2556128 38156749 ~ 38157209 (-) True G1862272
TU2132816 other upstream 3848776 39449397 ~ 39453415 (-) True G1864033

Expression Profile