RNA id: TCONS_00051924


Basic Information

Item Value
RNA id TCONS_00051924
length 649
RNA type processed_transcript
GC content 0.42
exon number 3
gene id XLOC_026658
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40153819 ~ 40162867 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATCTTCAACGCTGAGGTCTTGTTCAGAGAGGACTGCTCTCCAGATGATTTCATCGACGTCATCGTGGGCAACCGAGTGTACATGCCTTGTTTATACGTGTACAACAAGGTGGACCAGATTTCTATTGAGGAAGTGGATCGTCTTGCTCATCGACCAAACAGTGTAGTTATCAGCTGTGGCATGAAACTCAATCTAGATTACCTCCTGGAGCAGTTATGGGAATATCTGGCTCTCATCTGCATATATACCAAGAAGAGAGGAGTGTCACAGAATCCACCGGACGTTAGCTAGCCAGTTCAAGTATGCACTTGTCTGGGTAAGAGCTCCCTTCATCTGAAACACATTCTTGCTCATGTCCCATACATGTTTGTCTTCCTAAACTACTTCTTGTGTTTTTGGTTTACAGGGAACAAGCACAAAGTACAGTCCTCAGAGAGTAGGACTGACCCACATCATGGAGCACGAGGATGTCATTCAAATTGTGAAGAAATAAAATCTCGTCTCCAGATCCACTACAGTATCAACAGAACATTGGATACGTTTTCTGTTAACAGCTGCAATGTTTCAAGCAGCTTCACCTGTGATATCGACAATTGAAAAGTTAGTTTATGAAAATCACCTGACAAAACCCATTATAATAAATAACT

Function

GO:

id name namespace
GO:0002181 cytoplasmic translation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-29 Predicted to enable GTP binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be active in cytoplasm. Orthologous to human DRG2 (developmentally regulated GTP binding protein 2).

Ensembl:

ensembl_id ENSDART00000141963

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051913 lncRNA downstream 202767 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 458236 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 590993 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 699391 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 1040747 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00053081 lncRNA upstream 21449 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051928 lncRNA upstream 92729 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 237376 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 237376 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 244369 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051919 mRNA downstream 17551 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051920 mRNA downstream 85944 40062024 ~ 40068350 (-) True XLOC_026656
TCONS_00051917 mRNA downstream 99545 40000013 ~ 40054749 (-) False XLOC_026655
TCONS_00051918 mRNA downstream 99556 40000312 ~ 40054738 (-) True XLOC_026655
TCONS_00051916 mRNA downstream 99679 39975249 ~ 40054615 (-) False XLOC_026655
TCONS_00051925 mRNA upstream 26566 40185253 ~ 40202607 (-) True XLOC_026660
TCONS_00051926 mRNA upstream 47344 40206031 ~ 40232615 (-) True XLOC_026661
TCONS_00051927 mRNA upstream 76601 40235288 ~ 40254634 (-) False XLOC_026662
TCONS_00051929 mRNA upstream 102242 40260929 ~ 40276071 (-) False XLOC_026663
TCONS_00051930 mRNA upstream 109637 40268324 ~ 40275096 (-) False XLOC_026663
TCONS_00051921 other downstream 65493 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 196820 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 504732 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 894617 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051892 other downstream 1235577 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051938 other upstream 368192 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 368195 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 1153335 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2707396 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3922936 44081623 ~ 44094226 (-) False XLOC_026707

Expression Profile

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