RNA id: TCONS_00053081


Basic Information

Item Value
RNA id TCONS_00053081
length 724
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_026659
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40180136 ~ 40181654 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aacaATCTTGTCCGGGTTATTAAAGAAACACATTCAGGTAATTCATTCATGAAAAACATGTCTTTATTTTCATAATGTCTGACAACTGCAGTCCGAAGACGATCTGActgacgacaacaacaacaaatctttTTGTGTACATCTTTCAATCACAAGATGGGATATATTGCCTGCAGATACAGTGTTTAAAAAGAGCCACGGACAAGGTCaaggcatttttttttactgatgcaAAGTTTGCTCCTTCAAAATAGAAAAACCAAATAAATTGACAACTCATTTATCACCTATGCTTTTCAGAGGTGCAAATTTTGACCCAGTAAAACATACCTCAGTAAATGACTGTGAAACTGTCCCGTAACGTTGGTCCATgaagcacttttttattttattttattttatttttttaacaggagTGCAGAGTTACAGGAAACACAAGACCCTGATCACTTTCACAAACATACTCCATTTATATGAACTGAAGTACAATCACTATCATTTGTGTATGCTGCCCTATATCTCTGAACACAGAAACATCACCAAAATCTACCACAGATCAGACAAAGCACTGATGATGGTCACCAAAAcaccttcttcttttttttaaactacagcCAAGTGACGGATTGCTGAAGGGTGTCCAAAACGCATCACTTTGAATAAAACTCAAACGTACACTGCTCTTCAAAAGATTGAGCAGCGATCTAGCAGTTAAAGATCCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051913 lncRNA downstream 228609 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 484078 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 616835 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 725233 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 1066589 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00051928 lncRNA upstream 69762 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 214409 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 214409 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 221402 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051940 lncRNA upstream 345631 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051922 mRNA downstream 17269 40153819 ~ 40162867 (-) False XLOC_026658
TCONS_00051923 mRNA downstream 17293 40154241 ~ 40162843 (-) False XLOC_026658
TCONS_00051919 mRNA downstream 43393 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051920 mRNA downstream 111786 40062024 ~ 40068350 (-) True XLOC_026656
TCONS_00051917 mRNA downstream 125387 40000013 ~ 40054749 (-) False XLOC_026655
TCONS_00051925 mRNA upstream 3599 40185253 ~ 40202607 (-) True XLOC_026660
TCONS_00051926 mRNA upstream 24377 40206031 ~ 40232615 (-) True XLOC_026661
TCONS_00051927 mRNA upstream 53634 40235288 ~ 40254634 (-) False XLOC_026662
TCONS_00051929 mRNA upstream 79275 40260929 ~ 40276071 (-) False XLOC_026663
TCONS_00051930 mRNA upstream 86670 40268324 ~ 40275096 (-) False XLOC_026663
TCONS_00051924 other downstream 21449 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 91335 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 222662 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 530574 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 920459 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051938 other upstream 345225 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 345228 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 1130368 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2684429 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3899969 44081623 ~ 44094226 (-) False XLOC_026707

Expression Profile

//