RNA id: TCONS_00004947


Basic Information

Item Value
RNA id TCONS_00004947
length 2036
RNA type mRNA
GC content 0.44
exon number 18
gene id XLOC_002662
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15321522 ~ 15340450 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGATGCCGTAAAGTTGTTTGTCTGCACACATGGTCCATTATGGAGGGTAAACCAAGAAAGAAATCATTCACTCCAAGAGACGGAAAGAAACCTTCATTCAAATCCAAagGTAAACCTGGAGGAAAACCACAAGGCAAACGGCCATTCAAACCTCACAACAATGACAAAGGCAAAGGTTTTAGAAAGTCAGGTGGAGAAGGAGGACCACAGAAGTTCAACAGAAAGCCGACAGATGGAAAATTTGCCAAGAAGAGAAAATTTCCTGGAGACAGAATCAAACAAGAGGAAGGTGATGAGCGCAAAAAACCTAAATGGGATgagtttaaacaaaaaaagaaagaactgAAGCTGAATCGTCAGCAGACTGATAGAAAAGAGAGCTACCAGATCGTAAGCAGAGCAAAGCAAGTGTGGGAGATGGTAAGACGGAAAGACTGTGATAAGCAAAAAAGGACCAAACTGATGAAAGAGCTGCAGGATCTTGTAAAAGGCAAAATTAAAACGATTGCATTTGCGCATGATTCCACGCGGGTGCTTcagtgttttattcaatttggCAGTGATAAGCAGAGAAAGGAGGTGTTTGATGAACTCAAAGAACACATTGTGGAGTTGAGTAAATCAAAATATGCCAGAAACATTGTAAAGAAGTTCCTAATGTATGGGAGTAAAGAGCAGGTAGGTGAAGTGATGTTGGCTTTTAAAGGGAAAGTCAGGCAGATGCTCAGACACTCGGAGGCGTCTTCAGTTGTGGAATACGCTTATAATGATAAAGCCATCCTCTCTCAGAGACTCATGCTCACTGAGGAGCTCTACGGAAACACGTTCACCGTCTTAAAGTCATCAGTTTGTCCTACGTTAGAGAAAGTTCTTGAAGCAAATCCAGGGAAATTGGAGAGCATCTTGGATGAAATGAAGCAGATCCTTACACCCATGGCACAGAAAGAGGCTGTCATTAAACATTCATTGGTTCACAAAGTTTTCCTGGACTTCTTTGAGCACGCTCCGGACAAACAGAGAACGGAGATGATTGAGTCGATCAGAGAGGCCGTCGTGTACATGGCACACACACACGATGGAGCCAGAGTCACCATGCACTGTTTATGGCACGGCACAACTAAGGACCGAAAGGTTATAGTAAAAACGATGAAATCGTATATTGCAAAGTTTGCCATGGGTGAATATGCTCATCTTGTACTTTTGGCTGCATTCGATTGCATTGATGACACCAAGCTGGTTAAACAAATTATTATCTCAGAAATGGTTAGTTCCTTATCTGAAATAATCAGCAATAAACACGGTAAAAAGGTGCTGCTTTACCTGCTGAGTCCTAGAGACCCTGCTCACCTCTTACCTGAAATCATTCAAGTGCTGGAGAAAGGGGATGGCAATGCGCACAGTAAGAAGGATGTGCTGATCAGGAGAAAGGAGCTGCTGGAGGCCGCGTCTCcttctctgctgaatcatctgtgtgAAAACGCTCAGTCTATGGTCATGGATAAATCCTGCTGTGTGGTGGTGAGCGACATACTGGGCTCTGCTGTTGGAGATCTCAGACCTGCTATGGAGgcagtggcagctctggcagATGGACCCCTTATACCAGGTGGAAAGGATGGACAGCTGCATATGGCTGAACACCCCGCTGGTCATCTGGTGCTGAAATGGTTGATCGAGCAGGACACCAAGATGAAGGACACAGAGAGAGAGGGCAACGTTTTTCCAGGATTCTTCTGGAGAAGGTTGGGTTGGagaacctcaagacatgggcttCGGTCAACCGTGGTGCCATTATTCTTTGTTGTCTTCTCCAGAGCGCAGATGAAAGTGTTGCTGAAGAAGTGAAAGCTATGCTGAAATCCAGCATTCCTGAGCTACAGCGGCTCCAGAACTCAAAAGGAATTGAGGTTCTGCTTGAAAAACTTGCATAAAAAAGTTCGATCTATCAAtgatttttctttgttttcttcagtttttttaaaattgtgcatTTCTATGATGTTGTATGTAAATACAAATTACACACAATGAGA

Function

GO: NA

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDART00000127277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004943 lncRNA downstream 235231 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 237481 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00005751 lncRNA downstream 237632 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00006013 lncRNA downstream 278780 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 286568 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004955 lncRNA upstream 282508 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00005752 lncRNA upstream 376349 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004964 lncRNA upstream 596676 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 596676 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 596676 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00004944 mRNA downstream 192757 15120711 ~ 15128771 (-) True XLOC_002661
TCONS_00004940 mRNA downstream 267914 15050469 ~ 15053614 (-) False XLOC_002659
TCONS_00004941 mRNA downstream 268021 15052698 ~ 15053507 (-) True XLOC_002659
TCONS_00004938 mRNA downstream 272747 15046837 ~ 15048781 (-) False XLOC_002658
TCONS_00004950 mRNA upstream 41582 15381972 ~ 15405564 (-) True XLOC_002663
TCONS_00004952 mRNA upstream 277351 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004951 mRNA upstream 277351 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004953 mRNA upstream 277708 15618098 ~ 15644940 (-) False XLOC_002664
TCONS_00004956 mRNA upstream 296800 15637190 ~ 15644904 (-) True XLOC_002664
TCONS_00004937 other downstream 381182 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 589129 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 833374 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1389832 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 1709280 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004954 other upstream 277826 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 1737043 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1763908 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1805429 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 2001975 17342365 ~ 17342481 (-) True XLOC_002684

Expression Profile

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