RNA id: TCONS_00051928


Basic Information

Item Value
RNA id TCONS_00051928
length 447
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_026662
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40235288 ~ 40254634 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGATGCGGTCGACGTGAGACAGGAGCTAGATCTTCGCATTGGGGCATCGTTTACCAGATTCCAGACTTTGCGCCTGCAGAAGATATTCCCAGAATCTCTCTCTGATCAGCTCATCAGTTATGGCAGCTGTCAGTTCCCCACTCTTGGCTTTGTGGTAGAACGATTTAAAGCCATTCAAGCCTTCATCCctgaaacattcttcaaaatcaaAGGTACTAGTAATTTGCTCACCTAACATTTGATGgcacaatatgtaaaatatttattaaaacaaaaaaacatatacaaaaaaaaactttaatttataaaaaaaaaaaaaacatattgtgtaGATATATATCTAgaaccgcgtctttatttagaggagaagagaagcgaatccggatctccatTTGCAGcagagaaaagctctcgggtaaacaatgtacctttagacacgtaagtta

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003916 DNA topoisomerase activity molecular_function
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071212-2 Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5. Orthologous to human TOP3A (DNA topoisomerase III alpha).

Ensembl:

ensembl_id ENSDART00000155667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053081 lncRNA downstream 69762 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051913 lncRNA downstream 299889 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 555358 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 688115 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 796513 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00053082 lncRNA upstream 144118 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 144118 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 151111 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051940 lncRNA upstream 275340 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051941 lncRNA upstream 275340 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051926 mRNA downstream 18801 40206031 ~ 40232615 (-) True XLOC_026661
TCONS_00051925 mRNA downstream 48809 40185253 ~ 40202607 (-) True XLOC_026660
TCONS_00051922 mRNA downstream 88549 40153819 ~ 40162867 (-) False XLOC_026658
TCONS_00051923 mRNA downstream 88573 40154241 ~ 40162843 (-) False XLOC_026658
TCONS_00051919 mRNA downstream 114673 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051929 mRNA upstream 8984 40260929 ~ 40276071 (-) False XLOC_026663
TCONS_00051930 mRNA upstream 16379 40268324 ~ 40275096 (-) False XLOC_026663
TCONS_00051931 mRNA upstream 16416 40268361 ~ 40276057 (-) True XLOC_026663
TCONS_00051932 mRNA upstream 25759 40277704 ~ 40284744 (-) True XLOC_026664
TCONS_00051933 mRNA upstream 44840 40296785 ~ 40301467 (-) True XLOC_026665
TCONS_00051924 other downstream 92729 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 162615 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 293942 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 601854 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 991739 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051938 other upstream 274934 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 274937 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 1060077 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2614138 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3829678 44081623 ~ 44094226 (-) False XLOC_026707

Expression Profile

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