RNA id: XR_005039182.1


Basic Information

Item Value
RNA id XR_005039182.1
length 5668
RNA type mRNA
GC content 0.52
exon number 34
gene id LOC110502679
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 37302808 ~ 37327675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcggtaatgcaacatttattggatgccaaccgccgttaaacctcaTTGAAGAAGAAGTAGTTTCGCTACTCTCGAACACGGCTGATGCCTATGGTTACgcctgtgtagctagctacatgctaATTCTCAAAGCGCACTCAGTTGACCTATTTTGCAGGTGTTTTACATGGTGCGGTACCGCTAGCTTTCATCTCATTTTTTGAAGACGCTACTCAATATGATGGGTGAACCGGTGGCTGATATGTGTGATCAGCTTGTTAAAGCTGTGAACGTGATGATGGACGCGGAATCTAGCCAAATATATCGCTTGGAGGCCCTAAAGTTTTGTGAAGAATTCAAAGAGAAGTGTTCCTTCTGTGTCCCATGTGGGCTACAGTTGGCAGATAAAACTCAAACAGCAGTGGTGAGGCACTTTGGTCTACAGATACTGGAGCACGTTATCAAGTTCAGATGGAACAACATGCCACAGCAAGAGAAAGTCCAGCTGAAGAACTGTGCTATGGGGCTATTGTCAACTGGCACATATCCTATCCTGGAGGAGGAGAGCCACATCAAGGACGTTCTCTCGCGGATCATAGTGGAGATGATCAAGAGAGAATGGCCTCAGCACTGGCCTGACATGCTGAAGGAGATGGAGGCACTCACCAGTGTAGGGGAGgcccagacagagctggtgaTGTTGATCCTGCTGCGGCTGGCGGAGGACGTGATCACCTTCCGGACCTTGCCCACTCAGCGCCGTCGGGACATCCAGCAGACCCTCACCCAGAACATGGAGAGTATCTTTAGCTTCCTGCTCGCCATCCTGCAGCTCCACGTCGATGAGTACCGCAAACTGAAAAGAATACCTGGCCAAGAATTGCAGGCCAAGGCCCACTGTCGGGTAGGCGTGGCCACTCTAAACACCCTGGCAGGCTACATAGACTGGGTTGCCCTGGCAAACATCACCAATGACAACTGTCGCCTGCTGGAAATGCTGTGTCTATTGCTCAGTGAGACAGAGCTGCAGCTGGAGGCTGCAGAGTGCCTGCTCATCGCCATTAGCCGCAAGGGGAAGCTGGAGGACAGGAAACCACTCATGGTGCTGTTTGATGATGTTGCCATGCACTACATCCTCTCTGCTGCACAGTCTGCAGATGGAGCAGCAATATGCAACAAATCCTCTCCAACACAGCCAGTGTGGGCGGGGGTGGTGGAGAGACACTACACCTTCCTGAAGAGGCTATGTCAGGTCCTGTGTGCCCTGGGCAGCCAACTCTGCTCATTAGTGGGTTCAGATGTGGAGGTAGAGGTACCAGCAAACCTTAGCAAGTACACAGAAGCGTTCCTGGCCTTCACCACACACCCAAGCCAGTTCCTTAGGTCTTCCACCCAGATCACATGGGGAACTTTGTTCAGACATGAGATTCTCTCCAAGGATCCTGTCATCATCCAGATGACCATCAAGTACTTTAGAGCCACCATGACCAACCTAGTCAAGACTGGTTTCCCTTCCAGTAACGACAGTCCCAGCTGTGAGTACTCCCGTCATGACTTCGACAGTGATGAAGACTTCAACTCCTTCTTCAACTCGTTCCGAGCGCAGCAGGGGGAGGTGGTCCGGAATGCGTGTCGTATTGTCCCCTTGGAGGCCTTCCAGATTGCAGCAGAGTGGCTGCAGTATCAGATCAGTGCGCCCATCGATATCGGAACCACTGTGTCTAAGACGGCTGAGGGGCTGTGTTCTATCCTGTCTCCGTCAGTGGTCCAGTGGGATGCTATGACCTTCTTTACAGAGAGTGTTGTGGGAAAGATCTTTAAGAACGTGGAGGATGAGAAGTTGCCAGTAGACCAGGGCATTGAGCTGCTACAGGCTGTGTTGAACTACAACACCCAAGACCCTCTCATCCTGTCCTGTGTCCTCACCAACGTGTCCGTCCTCTTCCCCTTCGTCACACACCGACCTCACTTCCTGCCTCAGGTCCTCTACAAGCTATTTGCCTCCATCACATTCGAGGTGGTAGAGGAGAGTAAGGCACCACGGACGCGTGCGGTGAAGAACATCAGAAGACACGCCTGCTCCTCCATCATCAAGATGTCTCGAGACTACCCACAATTCATTCTTCCGTGTTTTGACATGATGTATAACCACGTGAAGAAGCTGTTCTCCAGCGAGGCTCTGTTGaacatgctggagaagtgtgctcttatGGAGGCCCTGGTCCTCATCAGTAACCAGTTCAAAGACTACAACAAGCAGAAACAGTTCCTGGAGGAGCTCATGGCCACTGTGGCCGCTCGCTGGACCTCCGACGAGATGAGGcgTGTGCTGTGGGATCCTGCTCTGTTCCTGGACTTCGTTGGTGCTGATCAGCTGGCAGCTGAAGGCACAGAACACACAACGGGCATCAACAGGTCacggTTGAGTTTCTGTGTGTACACCATCCTGGGGGTGGTGAAGAGGGCCCGCTGGCCGGCTGACCTGGAGGAGGCGAAGGCAGGGGGCTTCGTAGTGGGCTACACCCCTAATGGAGCCCCCATCTACAGAAACCCCTGCAGCGCCCAGGTCCTGGCACTGCTGCCCAACCTGCTCGCCCTCATCAGAACCCTCAACAGTCTCTTCCTGCCGGAGAACATTTGTCGTCTGAGTGAGACGTTCTCCAAGGCCTACGACATGATAGAggtggagaagaacatggttctAGGCCTGCCTCAGCCAGCCCTGGACATCTATGACCCTCCAGTGTATAAGACTCATCTAGAGCGCATGCAGGGATTCTTCTGTACCCTCTACGACAACTGTTACCATACCCTGGGGAAGGCAGGCCTATCATTGCAGCAGGACTTCTACACCATCGAGGGATTGGCTGAACAGATCGTTGGTTCTGCCTTTGTCTCCCTCGACAACGTGCCTGACCACAGACTCCGCACCATGCTCCGGGTGTTCCTGAAGCAGCTGGTGGTGTCATGTCCTCAGGAGTGCTACAACAGTCTGCTCTGCCCCCTGCTGGGCCCTCTGTTCGCCTACATGCTACAGAGACTCAATCTCAGGTGGCAGATCATCAACCAGAGGAGTACTGTCAGtgaggaggaggaggaggacgagtcGTGTGAGGAGAATCAGGAGATGCTGGAGGAGCAGCTTGTTCGGCTGCTCACCAGAGAGGTTCTGGACCTGCTCACTCACGCCTGCATAATGAAAAAGGTGCCTGCGCCAGCAGGAAACAAGGAAGATGTGGATGaggaggagatgatGTCCACTGAGTCCCAGGCAGTCGCTGTCTCCCCTGCCCAGCCAACAGGCGAACTGACGGAGCTGGGGAAGTGTTTTCTCAAACACGAGgaCATCTATATGACCTTGTTGACCATCTCATTCACCTCTCTGTCCTGGAAGGACACCAGTAACTGTCACCGCAGCGCCTCTATCGTGTGCTGGACCCTGCTACGACAGGTTGTAGGTGGGAACCTTTTGCCAGAGGCGGTCACATGGTTCTATACCAGTGTTCTGAAGGGACTGCAGATGCATGGGCAGCATGAGATCTGCAACTCAGCCCTCACACAACTGGCCCTGCTTATGTACGAGAACCTGCGGCCGCGGTACATGGAGCTAAGAGACGTGATGACTCAGATCCCCGACATCAATCTGGAGGCTCTAGACCAGTATGACCAGCGGTTGCTGGAGCCCAGCTCCGCTCAGAGgttgggagagaagaagaggaaagaCCAGTTCAAGAAGCTCATTGCTGGCGCTGTGGGGAAAGCTCTGGCCCAGCAGTTCAAAAAGGAGGTACATATCCGAAATCTTCCGTCTCTCTTTAAGAAGCCGAAGCCCGAGAAAAGGGACATTCTGGAGACCAGTGAGTGTGGAGCACTAGCAGCACTCTTCTCCCCAGCGTTGGATGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCAGCGTTGGATGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGAATGACATCTAGGAGCACTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCAGCGTTGGATGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGAATGACATCTAGGAGCACTAGCAGCACTCTTCTCCCCAGCGTTGGATGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGCGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGCGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCTCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCAGCGTTGGATGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCAGCGTTGGATGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCCCTAGCAGCACTCTTCTCCCCGGTGCTGGACGACATCTAGGAGCACAGAGGCCCTCAGTCtggcctaacacacacacactacaatcagCTGTTACAGGACTTCGACTGGACtagcatacacacaaacatgcatacacTTTCTATCCTCCCGGGGACTTTTACTCCTGAAGGATTGGTTCAACAAGTGTTCGACGTTTCTACCCTATCGATCGACAGTGGGATGAATGTGGCAGCCTCCCCATTTAGGACAAAGATCCGCAAACATGGACCATCCACCTGGGTGCTCAACGACTgcagccattttgtgccagaaGAACCTGAATGGGACCCAGTGAGCATGTCTGAGGTGTTAGACTTCAAAGTAGTCTGCTGTATAAGGAGAGCTATTTTCAAACCAATGTTTTGTACAGAATCATTACTCTGTTGATGGTTGAAGTAGAATTGTCATTGACTTTTTGTGCACTGCTTCTCCCAGCTGTGAACGTATGAGAAGCCAGCACTGCATTCCACCTATGTTCATGGAAATAGTTTGCCGCAACATCGACTTTTGTTCGGCGGTATTGTTTGTGAAAACTGATCCAACGTGGTCAAGATCCCATATTTTATACCATCTGTTTTGTAGGTCATATTTGTGTGCATTTGGAAGAAGCTGCAGGCCTGAATCTCAAATCAATTGGAAAAATAGGCACCAATTGCTGTGAGGTTTCTATGTTGCCAGTCTGTCTTTCCCATTAATATGGGACCAAAGCTGATTTATCCAAATACATACAGAATGATCTGAGTTTTTTGATGGCATAAAATATAATAGTCAGGGGACTTTGTTACATAATTTTGGGAGGAATCTTAGATTTTTGGTATGAACTACCCCTTTAAATCTCCCAACCCTGTCAATGATTGATTGTGGCCAACTTTTTTTCCTTAAtgaatgtataaaaaaacaaactTGTACAGGGGGAAAAGTATTTAAAACTGTAGTGCTGTTTTTATATTTTGCTGTTTTTAAATAAAGGTAGACTTGAGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2129846 lncRNA downstream 76499 37225661 ~ 37226309 (-) True G1861320
TU2129819 lncRNA downstream 138435 37163445 ~ 37164373 (-) True G1861294
TU2129814 lncRNA downstream 167437 37133647 ~ 37135371 (-) True G1861290
TU2129813 lncRNA downstream 169254 37133142 ~ 37133554 (-) True G1861289
TU2129756 lncRNA downstream 246369 37056064 ~ 37056439 (-) True G1861251
TU2129910 lncRNA upstream 9847 37337515 ~ 37337915 (-) True G1861371
TU2129912 lncRNA upstream 10612 37338280 ~ 37338552 (-) True G1861373
TU2130077 lncRNA upstream 64598 37392266 ~ 37393141 (-) True G1861524
TU2130083 lncRNA upstream 73018 37400686 ~ 37422365 (-) True G1861530
TU2130087 lncRNA upstream 76708 37404376 ~ 37406279 (-) True G1861532
XM_021580903.2 mRNA downstream 4333 37292026 ~ 37298475 (-) True LOC110502678
XM_036960387.1 mRNA downstream 13323 37125711 ~ 37289485 (-) False slit1a
XM_036960388.1 mRNA downstream 13323 37125711 ~ 37289485 (-) False slit1a
XM_036960393.1 mRNA downstream 13324 37125711 ~ 37289484 (-) False slit1a
XM_021581453.2 mRNA upstream 11599 37339267 ~ 37354024 (-) True si:dkey-103j14.5
XM_021580908.2 mRNA upstream 214917 37542585 ~ 37649964 (-) True prim2
XM_021580913.2 mRNA upstream 334397 37662065 ~ 37666312 (-) False LOC110502685
XM_021580920.2 mRNA upstream 355005 37682673 ~ 37692194 (-) False LOC110502689
XM_021580919.2 mRNA upstream 355005 37682673 ~ 37692195 (-) False LOC110502689
TU2128895 other downstream 851349 36448831 ~ 36451459 (-) True G1860462
TU2128534 other downstream 1343603 35954220 ~ 35959205 (-) False LOC110502661
TU2127381 other downstream 2059219 35243114 ~ 35243589 (-) True G1859038
TU2126950 other downstream 2333947 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 2461146 34839900 ~ 34841662 (-) True G1858575
TU2129907 other upstream 7359 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 829081 38156749 ~ 38157209 (-) True G1862272
TU2132816 other upstream 2121729 39449397 ~ 39453415 (-) True G1864033
TU2134138 other upstream 2852161 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other upstream 2852161 40179829 ~ 40185212 (-) True srsf2a

Expression Profile