RNA id: TCONS_00051932


Basic Information

Item Value
RNA id TCONS_00051932
length 1421
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_026664
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40277704 ~ 40284744 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAAACACGAACCACAGTTGTTGTCCGCGTTATATTTCGACTTATCCAAATGCTAATATCATTTGTTATGAATTACTGAGTATCTCAAATATCAGCAATAGTTTTATTATGGTAAAGCTGTGATGTTATTCTGTAGTCCACCATATTGCATCAGGCTAGGTGTCTGATCGTGTGCCTGAATGTAAATATAAGAACATGGACCCGCTGGCTAAATGCTAATCGATGACTGTACCTACATAATCGTGGAGTTTTGTGTTGGTGTCATTTACTGTATATCACCCGAGCCGATAAATACCACGAGCGGTTAAATACTGGCATTCAGTACTTAGTTAAATACGCTAGGTTGTGAACTGTGGCAACCTGATATCATTACTGTACCAAGCCTTTATTGGGATTCCTAGTGTGTTTAACtcgattatttttatttcaagtcAAGTTTATTCTTCATTATGCCTAAAGGAGGGAAAAAAGGTGGCCATAAAGGTCGCATGAGAACCTACACAAGTCCCGAAGAAATTGATGCTCAAATGAaagcagaaaaagaaagaaaaaagaatgaagaagaagaaggcGCAGCAGTGAACGACAACCAGAGTGAAGACAAACTAACAGCATCAGGTTCAGAGGACAGTGACGATGACGGGTCTCAGAAAAGAAAGGGGGTTGAGGGCTTGATAGAGATCGAAAATCCCAATCGAATCGCCCAGAAAGCGAAGAAAGTGACAGAAATAGAACTTGAGGGACCTAAACAGCTTTCCAGAAGAGAAAGAGAAGAGATTGAAAAGCAAAAGGCGAAAGAAAGGTATATGAAAATGCATTTAGCAGGAAAGACGGATCAAGCTAAAGCTGACCTCGCTCGACTCGCCATTATTAGAAAACAGCGTGAGGAGGCTGCACGGAAAAAAGACGAGGAACGTAAAGcgaaagAAGAAGCAGCagcggcagcagcagcagctaAAGGACTGCATACATTGTCTCTCAAATAATCTAAATCGTGGATTCTCAGAGGTTTTGTGGACAGTAAACAGTTATATTGACAATGTTATTTTTGAAGAAAACGCAAATGATAGTGAGGTATGCGATGCGAAACGATGTAACACGATGTTCTATTGAAAAGGAGCATTTCAGAGTATATTAACACAGAAAAGTGGGCATCGTCCAAAAACAAAACGCCTTTGTGAGAGCCCGGATTTGTTCAATTTTAATGCTTGCTTTCACTCAATGATATTAGGAATATagtcatatttattaatatattaacatattgCCACATTTAACTGAGGGGATTGTACAATATAAAGACGCCATAGTCTGTCCTCAGTTGTAAAGGACCTGGTGTAATTTAGAGCGACGTTCTGATGGTATTCTCTTAAAATATTGTAAAGGATAACAATAAAGTGTCAGAACTTTTTATTGAAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005829 cytosol cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-942 Predicted to be active in cytosol. Is expressed in axis; lens; myotome; polster; and solid lens vesicle. Orthologous to human PDAP1 (PDGFA associated protein 1).

Ensembl:

ensembl_id ENSDART00000018626

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051928 lncRNA downstream 25759 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053081 lncRNA downstream 96050 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051913 lncRNA downstream 326177 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 581646 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 714403 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00053082 lncRNA upstream 111319 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 111319 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 118312 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051940 lncRNA upstream 242541 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051941 lncRNA upstream 242541 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051929 mRNA downstream 1633 40260929 ~ 40276071 (-) False XLOC_026663
TCONS_00051931 mRNA downstream 1647 40268361 ~ 40276057 (-) True XLOC_026663
TCONS_00051930 mRNA downstream 2608 40268324 ~ 40275096 (-) False XLOC_026663
TCONS_00051927 mRNA downstream 23070 40235288 ~ 40254634 (-) False XLOC_026662
TCONS_00051926 mRNA downstream 45089 40206031 ~ 40232615 (-) True XLOC_026661
TCONS_00051933 mRNA upstream 12041 40296785 ~ 40301467 (-) True XLOC_026665
TCONS_00051935 mRNA upstream 241363 40526107 ~ 40529782 (-) False XLOC_026667
TCONS_00051936 mRNA upstream 241363 40526107 ~ 40529804 (-) False XLOC_026667
TCONS_00051937 mRNA upstream 241897 40526641 ~ 40528333 (-) False XLOC_026667
TCONS_00051943 mRNA upstream 316026 40600770 ~ 40664913 (-) False XLOC_026668
TCONS_00051924 other downstream 119017 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 188903 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 320230 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 628142 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 1018027 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051938 other upstream 242135 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 242138 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 1027278 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2581339 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3796879 44081623 ~ 44094226 (-) False XLOC_026707

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_03953528_03957334.mRNA True 1282 mRNA 0.37 5 CI01000046 3953105 ~ 3957695 (+)