RNA id: TCONS_00053083


Basic Information

Item Value
RNA id TCONS_00053083
length 1039
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_026666
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40396063 ~ 40405386 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agatgattagaaaaaaaaacctggTGCGGTTTCTAACCACCCCTGTCGTGCGCCTCTACTGTGAGGCGGTTTCAAGGCGTCCTCGTGAAGGTAGTGGGAGCGGGTCACACAGGCGGAAAAGACCTGTGTGAATTGTCAGATTCGAAAGAGCAGACCTCAACTGCAACTCTTGCTAAAATGACAACACTTGCGGCTAAAACGCCGAGCTTCGGGACTAGGCCTTATTCCCATGGACTCGCGGGAACAATAGCGCTGATTCGCCGCGGAAAGCGAGGCGCGGTCATCATGACTCTCCGAGCTTGTGTGTTGTTAACGGCCAGCGGAGCGGCGGTAAATGGCAGACGCTTTCGGCTTTGATCACGTTGGCAATTTTAACTGCACTCTGATAAAATACTAATTTTCCTTTGGACGTTGGTTAACATTCAGCCGTGCGCCTTTTCCGGTGGCTAAAAATCAGCGTGGATTGTTGCTTTATGGATCCTTTCTCTCGTCCTTTGTCACCGTCTGTCTGTAACTCTCGGTTATCAAAGGACTTCATGAACAACGCACATCTTGCTTTATTTGGACCAGAAAGCGTCTAAATAAGTATTAAATTGGGCTGCATGAAAACCCCCCACGCACATGCATGCTTTGCGTAACAGGCCTTTTTTCCTGAAACGTGCAAATAAGCAAGCTAATGGCCAAAGAGAATTTGCAAGTCACACACTGCTGTGAATACTTCCCTTGTAAAAGTGAAGGTGGATGTTTGTAATTATAATGCAAATGCACAGAAAATGTATAATGGGGGGTGAAACTCAGTTGTTACTGACACTAACTGTCATGCGAAACAGTTTCGTTGGCTTTTACGTCTCTTGCTTTTCCCctttacatgcatgcatacatatattTCTTAATGATGTTAAACAAGCAAACATATAGTTTTAGTATCAGGCAGTTGATTTATTCTATTGTTTAttactgatgttttattttacagtttgtgTTTGTATCAGTGGTTTCATGAACTATCACAAAAGACTTTAGATTATTAAAGTGTTCt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990234 transferase complex cellular_component
GO:0005657 replication fork cellular_component
GO:0030894 replisome cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051928 lncRNA downstream 151111 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053081 lncRNA downstream 221402 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051913 lncRNA downstream 451529 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 706998 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 839755 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051940 lncRNA upstream 122251 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051941 lncRNA upstream 122251 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051942 lncRNA upstream 122434 40527468 ~ 40529775 (-) True XLOC_026667
TCONS_00053084 lncRNA upstream 369384 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051957 lncRNA upstream 554544 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00051933 mRNA downstream 101589 40296785 ~ 40301467 (-) True XLOC_026665
TCONS_00051932 mRNA downstream 118312 40277704 ~ 40284744 (-) True XLOC_026664
TCONS_00051929 mRNA downstream 126985 40260929 ~ 40276071 (-) False XLOC_026663
TCONS_00051935 mRNA upstream 121073 40526107 ~ 40529782 (-) False XLOC_026667
TCONS_00051936 mRNA upstream 121073 40526107 ~ 40529804 (-) False XLOC_026667
TCONS_00051937 mRNA upstream 121607 40526641 ~ 40528333 (-) False XLOC_026667
TCONS_00051943 mRNA upstream 195736 40600770 ~ 40664913 (-) False XLOC_026668
TCONS_00051944 mRNA upstream 200085 40605119 ~ 40664868 (-) False XLOC_026668
TCONS_00051924 other downstream 244369 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 314255 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 445582 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 753494 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 1143379 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051938 other upstream 121845 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 121848 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 906988 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2461049 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3676589 44081623 ~ 44094226 (-) False XLOC_026707

Expression Profile

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