RNA id: TU2134138


Basic Information

Item Value
RNA id TU2134138
length 2383
RNA type TUCP
GC content 0.49
exon number 3
gene id srsf2a
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 40179809 ~ 40185223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCCGCCATTTCATGTGCGAGCAGCTAAGAGAAAGGGGTGAGTTTAGCATACAAAtcagcaaaacaaaaacaaatttaGTCTAGAATAACGATTTTAATCTTCGTCTGGCTGTCTCATTTTGAGGAGCAAAGATGAGCTACGGAAGGCCTCCGCCCGATGTCGAGGGTATGTCCTCGCTCAAAGTGGACAATCTCACGTACCGGACCTCGCCTGAGACCCTACGCCGAGTTTTCGAGAAGTATGGCCGGGTGGGAGACGTGTACATCCCCCGCGATCGGTACACTAAGGAGAGCCGTGGTTTCGCCTTTGTGAGGTTCCACGATAAGCGCGACGCTGAAGACGCGATGGACGCCATGGACGGGGCCTTGCTCGATGGGCGGGAACTGCGAGTGCAGATGGCGCGATATGGCCGTCCACCAGACTCCCACTTCGGGCGCCGAGGCGGCAGTGGACCCCCAAGGAGGCATGGAGGCTACGGGCGCAGGAGCAGAAGTCGTTCGGCCAGCCCCCGCCGGCGAAGACACAGCCGTTCCCGAAGCAGGAACCGCAGTCGTGGCCGTGACTACAGCCGCTCACGGTCTCGTTCCTACTCTAGATCCCGTTCCAAGTCCCGCACACCCCGCAAGAGCAAGTCCCCATCCCGATCAAGGTCCCGCAGCCGCACCCCGGCTTCTAACAGAGGCTCACGGTCGAGGTCCAAGAGCATGCCCAAATCCCCCGATGACAACGGAACCGAGTCTTAGTAACAACAGTTCCAAGCCAGACCCAATGTCAGACGATTGAGACTTCTTCTCTGTGGACGTCAACCAGAGCTTAAGTCTGCCAGTGGACACCTCTCTACGCCTAACAGAATACTGACCAAAAGGTTGTGACTTGGTCTAAAATGTTTCAGTTGCCCAGAAATAGACTACTATATATTTACCAATGCGTGTAATGCCGTTGACTAGAGTGAAGGACATGTTTTGAGGTTAACTGTATTTTGTCCCATTGTTAGTGCAGGTTTGTTGCATATTAATTTGATTTAAACTTTTATGAAGTAGCCCCCCCCCTcttttttaaaaatgaattgaagCCCTTATTTAGTAGTCTAATTCTCTACAGAAGTATTCCCGTATTGAGTTACTGCTGTTCTTCTTTTGGAGAGTTGAATTTAGCAGTTACCCTAAACCAGCAACATGTAGAGGGAAACCATATAAGCCAAAATTGTATAAAAAATATGTAACATTTTACGTAATTCTCTAACCTAACTAGGAGTGCAGATAGTTTTTTCTATTTTTATGTAtgtacaccaaacattaggaacaccttcctaatattgagttgcacctccctcTTTGCCctggtgttgaaagcgttccgcagggatgctggcccatatagACTCCAATGCTTGCCACAGTTGTCCAGTTGGCTGGATCTCCTCTGGGTgatgaaccattcttgatacacacggggagCTGTTGAGCATTAAAaccccagcagctttgcagttcttgacacaaacctgtgtgcctggcacctactatcataccctgttcaagggcacttcaatattttatcttgcgcattcaccctctgaacggcacacatacacaatccatgtcacaatgcttaaaaatccttctttaacccatctcctccccttcttctacactgattgaagtttaTTTAGCAAGTGACACCAATGAGGGATCatactttcacctggtcagtctgtcatggaaagagcaggtgttcttaatgtttactgtactcagtgtatattgttgATACTTTTTTTTGTCTCTGGTATGCATTTACTTAATCCCCTCTTGTGTCATCTTTTGTGCACTAGGCGCAGTTGTGTAGCAGTTGAGTATTGCTGGTTAGCTGTTAAGGTGCGATGCAGTGCTGATGGTGAGGTGGCAGTGCTGTGGCTGGCGGGGGTGTTGCGGTGCCCGGTGAGTGCCCGGTGCAGTTGCCGCCCTGCTATCGACTTGGTGCTGCTGCCGTTTGCCTGGTTCTGGTCTGTAAGAATAAATCAATCACTGCTGTGGTGGCAGATCTGatcatcccatctctctccctctgttgtcTTATGGTCTCTTACCATTGTGGATGTACCAATACtattctcttcctcccctctttcttcatccctagcctggtggaaccagtcTGATCATtgtattatcctacacacacacacacacacaccccccccccccccaactgtgcTTTAGTCCTCTGTTGTGAGCTGGTTGTATCCACTGATGGAAGAGTCTGTTATGGCTCGAAAGAGGAGGGTTGGATAAAGGGCATCCCACTAGCTTGATAAATTAGTCTCATTATTCTTTTGTGAACCCTCACAAGATGTCTTGTAAATGATCCAGGTGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2134135 lncRNA downstream 6576 40125200 ~ 40173253 (-) True G1865244
TU2134103 lncRNA downstream 114915 40064703 ~ 40064914 (-) True G1865216
TU2134101 lncRNA downstream 118373 40060970 ~ 40061456 (-) True G1865214
TU2134097 lncRNA downstream 124409 40055191 ~ 40055420 (-) True G1865210
TU2134093 lncRNA downstream 130785 40048272 ~ 40049044 (-) True G1865206
TU2134192 lncRNA upstream 19903 40205115 ~ 40207803 (-) True G1865291
TU2134221 lncRNA upstream 46692 40231904 ~ 40232971 (-) True G1865314
TU2134217 lncRNA upstream 47862 40233074 ~ 40234410 (-) False G1865312
TU2134218 lncRNA upstream 47937 40233149 ~ 40234410 (-) True G1865312
TU2134230 lncRNA upstream 71403 40256615 ~ 40256927 (-) True G1865323
XR_002470364.2 mRNA downstream 1897 40155005 ~ 40177932 (-) True LOC110502750
XM_021581012.2 mRNA downstream 1898 40155005 ~ 40177931 (-) False LOC110502750
XM_021581013.2 mRNA downstream 1898 40155005 ~ 40177931 (-) False LOC110502750
XR_002470363.2 mRNA downstream 1898 40155005 ~ 40177931 (-) False LOC110502750
XM_021581011.2 mRNA downstream 36654 40135822 ~ 40143175 (-) True trim8b
XM_021581022.2 mRNA upstream 66019 40251231 ~ 40254244 (-) False nat9
XM_036960451.1 mRNA upstream 66493 40251705 ~ 40254215 (-) False nat9
XM_021581023.2 mRNA upstream 66493 40251705 ~ 40254320 (-) True nat9
XM_036960452.1 mRNA upstream 85206 40270418 ~ 40290299 (-) True eme1
XM_036960457.1 mRNA upstream 202934 40388146 ~ 40427586 (-) False LOC110502760
TU2132816 other downstream 726414 39449397 ~ 39453415 (-) True G1864033
TU2130947 other downstream 2022620 38156749 ~ 38157209 (-) True G1862272
TU2129907 other downstream 2844415 37335027 ~ 37335414 (-) True G1861368
TU2128895 other downstream 3728370 36448831 ~ 36451459 (-) True G1860462
TU2128534 other downstream 4220624 35954220 ~ 35959205 (-) False LOC110502661
TU2137175 other upstream 2730194 42915406 ~ 42978144 (-) True G1868010
TU2138185 other upstream 3301656 43486868 ~ 43501433 (-) True G1868940
TU2141784 other upstream 5842708 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 6612023 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 6756074 46941286 ~ 46942457 (-) True G1873030

Expression Profile