RNA id: TCONS_00051943


Basic Information

Item Value
RNA id TCONS_00051943
length 7522
RNA type mRNA
GC content 0.41
exon number 15
gene id XLOC_026668
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40600770 ~ 40664913 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCACTACAGCTCCTCCTTCTTGTAGGACGCATTTGCGTCTGACGTCACGCTGGCTTGTTTTGGCCGTTTGTGTCGATATCCGGCGATCAAACGCTGTCGATGTGCTGGATATTGTGACTGAGAGATTCttgtgtgtgcatgggtgtttgtGTGAGAGGGAGACGGTGGACGACTCAGGGAGTCTGTGTGTCTTATCATGGCTGACGGGTCCAGTGATGATGATGTCATCCACCTGGCTAGTTTCAACACCCATCGCAGTCGAGGTACTAACACCACCATGgctttatttaacatttcatGGTTTAGTAGTAATTTGAAAATTCTTACCGATTTGTATTGATTCATGTTGGTTTATTTGGCAGCTAAAAGGGTTAGGACTAGGACGTCCTACATAACCATATCTTCATCATCGGATTCTGATGATGAACCTGTTAGATTTGTACCAAATGGCACTGTTGTGGTCaaggatgatgaagaggaggaagaagtCAGCATCTTGGAGCCCCAGCCCTCACCTCATCGTGAGCTAATCCGACCTGCTGCCAAGTGGGGTGCGAGCACTTTCCCAAGCCTGGCATCTGGATCCAGCAGACATCCTACCAGCGCACACGCTCATCCTCCTTCTGTAGTCGCCGCACATCCTACATTAGGAAACCAAGCCATAGGTGTCTTAACCACGGACCAGAATGCTGTACCTTCGACGTCTAGAGAACATGCCTTGCGCAGACCTCCTCTGCGTGATAAGGACTCACTGCCTCTTCAAACGGACCCTTCATCTAGCACACACTCAGTAAATCAGGCCAATTCTGCATTTTCACCTCCTTCCACCACTGAATCAGGTCAGTCAGACTCGGGCCACAAAATCGAAGTCGTCGTTTGGCCGAGAACTGAAAGGACCATAAAAAGACCTCGGACGCCACAGGAGACTGTGTTAGTAGAGGTCAGACGAGATGAGCAGCCATTGGCTCCTGGTATCCCTGCACAATTACCCGCACCGGCTGACAATGAGAGGCCTGGACCGTCAATGCCCAGAGAACCCCTAATACCGCAGGACTCTCACAGGACGTCCCTCGATCTCCTGGTGAAGGGGGTGACGGACCTCTTTCCCGATGTGCAGGATGCATATGTAGCAGAACTGATAGAGAGAGGTGACCTGAAAGATTTAAATGTAATATGCAATATTTTGTTGGAAAATCCTGACTATCCGAAGAAAGCAAACTCAGTTTTGACTCAAAGTAGTGTTCTTCTTGAGACGAACGATTCTGAGACGCAGGTTTGCATGTATTTTGTTGAGGTTTTGATACTGTGgattctcagaaataaaagaaatgtaaCTGATTTGGCATGTTGTGCTTGCTTTTTCTTTCTCACGCAGGAAAGTgaaaattattttgattatttcaaACTTAAGACTGTTGGCCCAGAGGTTGTCGTTCAGGCTGCAGACATGCTGATGGGTGACTTCAGAATGTTGAGCTGTCAGGATATCAAATGGGCACTGAATTGCCTCAAAGGACACTATGCAATCACCCGAAAGGCCTTATTCGAAGCCCTTAAGAAGTGGCAAGAGAACTCAACCGACCCCTCAGGGAAGAAGAAGAGAAGGAGAGAGCCAAATGAGCGCGCCTACATAGACTTCAAATTTGAGCAGGGTTCTTTTAAACTGGAGAGAAAGATGTACTTTTTGGAGAAGAATCGCAGGTGGAGCCGAGGTAATGAGACTACACTGGAGGCGTCTCTcgtgaaagagctgcagttttaCGAGCAGAAAGCCAAGGAAATGGCTGAGCATGAAGACTTTCTTTTGGCTTTGCAAGTGAACGAGGAGCAGTATCAAAAGGACGGGCAGTTGATTGAGTGTGGCTGCTGCTGTGGGGAGTTTGCCTTTGAGGAGATGACCCAGTGTACTGATGGCCATCTTTTCTGCAAGGAGTGCTTGGTGAAATACGCCCAAGAGGCAGTATTTGGCTCAGGAAGGTCGGAGTTGAGTTGTATGGATGGGAACTGCACATGTTCCTTCCCTAACAGCGAGCTGGAGAAAGTTTTACCCGAAAACATTCTGTGCAAATATTACGAGCGACAGGCAGAGGAGGCCGTAGCAGCCACCTGTGCTGATGAACTGGTCAGGTGTCCATTTTGTAACTTCCCAGCACTTTTGGATAAAGATGTTTCTTTATTCAGTTGCCCGAACCCTCGCTGCCGAAAGGAGAGCTGCAGGAAGTGCCATGTGGTGTGGAAGGAGCACGCAGGAAAGACCTGTGAGCAGGTGCTGGAGAGGGACGAGATCCGCCTGCGGGTGGCCTTTGAGGAGAAGATGACGGCTGCCCGTGTCAGGAAGTGCCACAAGTGTGCCACAGGTCTGGTGAAGTCGGAGGGCTGCAACCGAATGTGGTGCCGCTGCGGCGCCTACATGTGCTACCTCTGCCGAGAGCCAATCAACGGCTACAACCACTTTTGCCAGCACGCCCGCTCGCCCGGTGCCCCCTGCAGACACTGCAAGAAGTGCTCGCTGTGGACGGACCCTACGCAAGACGATGAGCGAATCATTCAGGAGATTCAAAAAGAAGGTGAAGCGGAGTTAAATAAGAAGACCACTCAGCCGAATCAGCCAGAAACCACAGGGAAGAGAGTGGGCCCTCCGCCTGAGCCCATCCCAGCCAAGCGTCCTCGGGTGACGCCGCCAGCCCCAAACGCAGCTCCTCAGGCTGTCCGTGCACCGCTGCTCATCCCGCAGGTCATGCTGCCCGGCCCGCAGCGCCTCTTCCTTCAGCCCATTCCAGCCCCATACGTGCCCCCGCTGCCCAACCTCCCCCCGGTGAACTACCAACCTCGAAATCTAAACTTTGACTTCAATATGCCTATGCACTATGGACCACCGCATCGCTTCTTCAGACCTCTTTGAGGACCACCACGGTACAAAGAGACACTTTTGaactcttaaataaaaaaatccaggCTTCTGTGTCTTAACTGTTAGCCCTcactgttttttgttgtttttttctacgTATTTTGTAACAGGAACCAAACTGATTTTCGGGAGAGTTTTAAGGACACCTGTTGGATTTACTTCTATGTTGAAAGTCATTTTTTGAACAACACGCAGAGTCAATAATAAGAACTTCTGTTagttttcagttgaataaaacaAAGACCTTGATGGAAATTTAACCGGTTTGTTTGCAAAATCAGTCaaattcaaatgaaatgaaatgaaatgaaatgaaatgggggaaaaaaaaaaacatttggtgtTGACTGGGGTTTCTCCTGTAAGGTTAGCAACACAGCTCTCTACATTTAGCAAACGGTTCATACAGTTTTGTGGAAGCCCAAATGCGAAGATCACCTCTTAATACAGCGTTTGCTCTGTACTGCCTGTTTTGCTACTGACATTTGCGCTTCCTGATTAAAAATTTGAGGTAAGTTCTTAATGTTAATTCATATAAATGAATTCATGAAGTTGATCAAACataacagtaaacatttattatgtttatttgttaatgGAATCACACATATATTAACCCGTATGTGCTGTTGGAGATGTTTTCATCctctctggggtgattttgtgtcttaattttGCCACAACTGTCttagctagcagaatgatttttggtgacgaCATCctattttcatagatattttgGGAAAATCCTTTGAAGTTTAAAAACTGAGCTATTCACTCCGGGCAAATTTACTAACCTTTTATcatgttcaggatgaaaacatccactgaatgaaactgctgtaaaaatgcatcagattaatattctttttcattttttgcataaatctgttaatcaacctcagtcctgatcaaaactactaaattgcttggataattacaggattttaactctttaattgccaaattcataaatgatgtcactgaattGATGATAAAGcacacaaaatgatgtattttcaatataaaaagtaagtgttgactggatttttgtttttatcttttatcaAAGTTTTGGACGTGTGAAATAACATtgcctttgtttttttattaactttcatttttttctccctaataaAAATccatttttttcaccaaatcagtcacatcatttgggaatttggcaattaaagattaaaaatcctgaattttctaaacaattgagtagttttgatcaggactgaggacagatttatgcaaaaaaaaaagaaaaaaaaagaaatctataTTAATCTGATACATTTTTACAGctgtttaatttagtggatgtttttaaaaaacaaaagggtagtacatttaAACAGTGCAAAAGGGTTAAGAAGCACAGCGGTTTCCAAATAACCTGTTCACATCAAAGTCATTGACTATAACAATAACAATCACAGTATCAAAAAGATTTTTTCTAGATGctgaattataaaaacaaaagagaTCAAAAACGGTGTGGATCATTATTTTCTCTAGTCTAGACCTTATCATTCTAGCAGAGCCAGTCTAAACCAATAGGCGTGGTAAGCAGCCACATAAGGCCCCGGGGAATTAGGGGGCCTCGACCAATACCAATAAGCCTATAATAGTCATATAgctcatttatcatttaaaaaaatatatgaaattttACAATCTGTTGTCAAAACTGTttgaaaaaacaatatttttttcatataaatgtttaatattttaacatttatgttaAATAACATAGGGGCCCCCATGGAAAATGAACTGTTCCTTTCAAACTGCACACGCGCAAGGAGTGAGCGGTTCAAAGAGACTGCAAGCAATAAGAGTAGAGGTTGGTAGACTGCAAGTGTGTTTTGAGAACGTTTTGGAAAAAAGACGAATTAATATAATGGAAAACAATTTTACATTGAGACGATAAAGgttcctttaaatattaaaataaaaaatatatactttaaatatatttttaacatgcaggttatttacaaaaaaaaaaaaaaaaactaatctacaaAGGAAAAATATCTATAAAGAAAGAGAATGTTTTGACTTTCAAGGTTAGAGCCCCCAAATCACCAAGTCCGCCCCTGCATTCTAGGTGTAAACAGGCCATAAATGTTTAAGCTCTTTAAAGCAGgacgttttattattataatttttttttttattgttcatcagTAAGAAAAACTTTTAGTGTCATCAATATTGTCTTTTATCTGTTATTGTCCTTGATGTGAATGGGCCTTTCAAATAAATATTGAAGTAAcgtcatgtgacactgaagacgtgatgctgaaaattcagctttgaatagGTAAtacaaattttgttaaattttttatttttaattttgcaacATTTCTGTCCTTTAGTGACCCCACTAAACACAAGTGGTCAGACTCTTAACCTCAACATCCATGAAATTTGCGCAGTTTTTCTCTTTTAAAGCGCCCATTTCATGCGTATTCAGCATCATATCCAGCTCTAGCTGTGTTGTCACATTTTTAAGATCCTGTCTGATCGGCAGCACAAAGGGAAGTGGATGCAGAGCAACAATAAACAGATGTAAATAGCATGGTCGAGGATATTCAAATTTAATTAGACAAGAGACATTTCTTTGTTCTGGAAGATCCACACAGTGAGCCTGAAAGCCTCTCTCTCATGGATGCTTTTAAATTTAGGTCCAGTTATACATCAGTGAAGACGGATGAAATCTTCCAAACGTGTTTACTGACTCATTTTCTCCATTATTTGAAACACGATCCAATGTGTTGGGCACATTGCTTAACTTTAAAAGGTCTATTGTGGGCAGGTCTCTTCCAAAAAGTTTTGTTTGTGTCTGTAAATTAGCTTGTTTAAACTTCAACTTGATGGGAAATATACTAGAAATACTATAGAATTAGATAAAACGCACAAAACTCCTGAATTTTATTCACTATTAAACGATCAATCATTGGCTCCTGTTCTAGAAGACGGGCTTTATTCACCACATAACTATAGATGATTGGCTCCTaaactagaaggcgggctttattcaccatgtagagatcgatgattggctcctgtactagtaggcggggctttattcagcATATTGATCATTACTCTGTATTATAGAGTCTTTTGGTATAGCTAAGCTCTTTCTTGTGTGGAACACAACTTTATTGTTAATGTTACTTGTATGCATTGGACTGCGTTTGTCAAACTCATTGCGAGACAAGACAGCCggagtatttatttaaaatgtcattgaatgcaaatgtttattataGAAGTCCCCTTAGCCAATAAGAATGAATTACAGGTAAGCCCTCCCCATAAGAGCTTTGTGCAAGAATCGCAAATGTAAATTTGAGAAACGTAAACTCTGGCAGCGCAATCGAAATTGCATTTAAAGAAATCGAAGCAGAGAGTGAACCGAACTAATAATACACTTTTCCTAAAGACggtatttttttttctcgattgttTTTTAattcgttaattttttttttaacttgtactTGTTTGTGCAAAAGTTTCGAGCATTTTATTTGGCACAAATCTATTTCCATAAAATACCAGCTGTTCAGATTTGGTTTTTATATCAGTGTGTTCTTTATAGTAACGGAAACATTATCGAATTACCCAatatgttgttaataataattgaaCAGGTAAAAGCACCAGCACACGTTTTTAATCACAACTTTTTAAAGACATCTGTGGCATTTGCGCATAAATCATCTATAGTCATTGCGCataagtcatttatttttattttacaggctCTGCTGATCAGACACTGAACATTTGATAAAAGGTATTCatggtttttttatttatcttttacttTAATAAAAGAGCTGCTCAATAATTTAGTCTCGGTGTCAGAAGATCTTCCCTTTGTCACGGTGAAGCTGGTGTCATTCAGCACGTAATGTCCACAGAGTGTTTATTGTGTTGTGTTGCGTGACTGCTCTATTGGTGTGACGGCAGGTCAGTCAATCTCCTGCAGAGTCCAGTTCTCTTGCCCAGAGCTTCAACAAAGAGCCAGAGCTGTTGATGGAGCCTGcaggacctcccgctcctctgcCCCGGGCTCTATTCACACGCCTTACAGTAAGCCGAGGTGATTACAGAAGCCTTTTCTTTTGGTGAAATGAAAGAAAGATTATTGTGTCAATCGAATCCAAAGAAACAATCCTGAAGAGGAAAAAAACAAGACAACCTGTCTGTTATCTCTGTCCATCTGTTGTCATTGGCGTATCTGAGCACACCTGACACGGTGTAGGCAAATGAAGTGTCTCGGTTTGACATTGTAACCTCCTAATGGGTCAGCAGATGGAGGATCTTAAGGCCTGTGGGCTCTCAGGTGTGAAGGGTCAACCCTGGCAGCTTGTGCTCCAATGCAGCCACAGCATAAAGCTTCCTGAAACTGGATCTGTTCCTCTGAATCTTCTGCATCTCGTCTCATAACAGCAGAGATAATCTCAGGCCACCAGTTTTTAACTCTCATCTCATGAGAGATTTGTCTGTCTTCAGTATGAGTGACAAACTCACTAGGAAAAGCATGGCAAGCCTTGACTCATTTGACAAAAACAAG

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0043010 camera-type eye development biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-081104-199 Predicted to enable metal ion binding activity and transferase activity. Acts upstream of or within camera-type eye development and cerebellum development. Human ortholog(s) of this gene implicated in Gordon Holmes syndrome. Orthologous to human RNF216 (ring finger protein 216).

Ensembl:

ensembl_id ENSDART00000178567

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051941 lncRNA downstream 70994 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051940 lncRNA downstream 70995 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051942 lncRNA downstream 70995 40527468 ~ 40529775 (-) True XLOC_026667
TCONS_00051934 lncRNA downstream 195384 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053082 lncRNA downstream 195521 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00053084 lncRNA upstream 109505 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051957 lncRNA upstream 294665 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00051965 lncRNA upstream 731210 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA upstream 780281 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051968 lncRNA upstream 866369 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051936 mRNA downstream 70966 40526107 ~ 40529804 (-) False XLOC_026667
TCONS_00051935 mRNA downstream 70988 40526107 ~ 40529782 (-) False XLOC_026667
TCONS_00051937 mRNA downstream 72437 40526641 ~ 40528333 (-) False XLOC_026667
TCONS_00051933 mRNA downstream 299303 40296785 ~ 40301467 (-) True XLOC_026665
TCONS_00051932 mRNA downstream 316026 40277704 ~ 40284744 (-) True XLOC_026664
TCONS_00051946 mRNA upstream 15018 40679931 ~ 40681001 (-) True XLOC_026669
TCONS_00051947 mRNA upstream 25299 40690212 ~ 40768548 (-) True XLOC_026670
TCONS_00051948 mRNA upstream 156744 40821657 ~ 40837218 (-) False XLOC_026672
TCONS_00051949 mRNA upstream 160994 40825907 ~ 40836081 (-) True XLOC_026672
TCONS_00051950 mRNA upstream 211640 40876553 ~ 40896927 (-) True XLOC_026673
TCONS_00051939 other downstream 70991 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 70992 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 442083 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 511969 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 643296 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051964 other upstream 647109 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2201170 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3416710 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 6530224 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 8412849 49077762 ~ 49077879 (-) True XLOC_026748

Expression Profile

//