RNA id: TCONS_00051945


Basic Information

Item Value
RNA id TCONS_00051945
length 2490
RNA type mRNA
GC content 0.52
exon number 16
gene id XLOC_026668
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40600770 ~ 40664913 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGACGGGTCCAGTGATGATGATGTCATCCACCTGGCTAGTTTCAACACCCATCCTAAAAGGGTTAGGACTAGGACGTCCTACATAACCATATCTTCATCATCGGATTCTGATGATGAACCTGTTAGATTTGTACCAAATGGCACTGTTGTGGTCaaggatgatgaagaggaggaagaagtCAGCATCTTGGAGGTTACTagaCCCTCACCTCATCGTGAGCTAATCCGACCTGCTGCCAAGTGGGGTGCGAGCACTTTCCCAAGCCTGGCATCTGGATCCAGCAGACATCCTACCAGCGCACACGCTCATCCTCCTTCTGTAGTCGCCGCACATCCTACATTAGGAAACCAAGCCATAGGTGTCTTAACCACGGACCAGAATGCTGTACCTTCGACGTCTAGAGAACATGCCTTGCGCAGACCTCCTCTGCGTGATAAGGACTCACTGCCTCTTCAAACGGACCCTTCATCTAGCACACACTCAGTAAATCAGGCCAATTCTGCATTTTCACCTCCTTCCACCACTGAATCAGGTCAGTCAGACTCGGGCCACAAAATCGAAGTCGTCGTTTGGCCGAGAACTGAAAGGACCATAAAAAGACCTCGGACGCCACAGGAGACTGTGTTAGTAGAGGTCAGACGAGATGAGCAGCCATTGGCTCCTGGTATCCCTGCACAATTACCCGCACCGGCTGACAATGAGAGGCCTGGACCGTCAATGCCCAGAGAACCCCTAATACCGCAGGACTCTCACAGGACGTCCCTCGATCTCCTGGTGAAGGGGGTGACGGACCTCTTTCCCGATGTGCAGGATGCATATGTAGCAGAACTGATAGAGAGAGGTGACCTGAAAGATTTAAATGTAATATGCAATATTTTGTTGGAAAATCCTGACTATCCGAAGAAAGCAAACTCAGTTTTGACTCAAAGTAGTGTTCTTCTTGAGACGAACGATTCTGAGACGCAGGAAAGTgaaaattattttgattatttcaaACTTAAGACTGTTGGCCCAGAGGTTGTCGTTCAGGCTGCAGACATGCTGATGGGTGACTTCAGAATGTTGAGCTGTCAGGATATCAAATGGGCACTGAATTGCCTCAAAGGACACTATGCAATCACCCGAAAGGCCTTATTCGAAGCCCTTAAGAAGTGGCAAGAGAACTCAACCGACCCCTCAGGGAAGAAGAAGAGAAGGAGAGAGCCAAATGAGCGCGCCTACATAGACTTCAAATTTGAGCAGGGTTCTTTTAAACTGGAGAGAAAGATGTACTTTTTGGAGAAGAATCGCAGGTGGAGCCGAGGTAATGAGACTACACTGGAGGCGTCTCTcgtgaaagagctgcagttttaCGAGCAGAAAGCCAAGGAAATGGCTGAGCATGAAGACTTTCTTTTGGCTTTGCAAGTGAACGAGGAGCAGTATCAAAAGGACGGGCAGTTGATTGAGTGTGGCTGCTGCTGTGGGGAGTTTGCCTTTGAGGAGATGACCCAGTGTACTGATGGCCATCTTTTCTGCAAGGAGTGCTTGGTGAAATACGCCCAAGAGGCAGTATTTGGCTCAGGAAGGTCGGAGTTGAGTTGTATGGATGGGAACTGCACATGTTCCTTCCCTAACAGCGAGCTGGAGAAAGTTTTACCCGAAAACATTCTGTGCAAATATTACGAGCGACAGGCAGAGGAGGCCGTAGCAGCCACCTGTGCTGATGAACTGGTCAGGTGTCCATTTTGTAACTTCCCAGCACTTTTGGATAAAGATGTTTCTTTATTCAGTTGCCCGAACCCTCGCTGCCGAAAGGAGAGCTGCAGGAAGTGCCATGTGGTGTGGAAGGAGCACGCAGGAAAGACCTGTGAGCAGGTGCTGGAGAGGGACGAGATCCGCCTGCGGGTGGCCTTTGAGGAGAAGATGACGGCTGCCCGTGTCAGGAAGTGCCACAAGTGTGCCACAGGTCTGGTGAAGTCGGAGGGCTGCAACCGAATGTGGTGCCGCTGCGGCGCCTACATGTGCTACCTCTGCCGAGAGCCAATCAACGGCTACAACCACTTTTGCCAGCACGCCCGCTCGCCCGGTGCCCCCTGCAGACACTGCAAGAAGTGCTCGCTGTGGACGGACCCTACGCAAGACGATGAGCGAATCATTCAGGAGATTCAAAAAGAAGGTGAAGCGGAGTTAAATAAGAAGACCACTCAGCCGAATCAGCCAGGGAAGAGAGTGGGCCCTCCGCCTGAGCCCATCCCAGCCAAGCGTCCTCGGGTGACGCCGCCAGCCCCAAACGCAGCTCCTCAGGCTGTCCGTGCACCGCTGCTCATCCCGCAGGTCATGCTGCCCGGCCCGCAGCGCCTCTTCCTTCAGCCCATTCCAGCCCCATACGTGCCCCCGCTGCCCAACCTCCCCCCGGTGAACTACCAACCTCGAAATCTAAACTTTGACTTCAATATGCCTATGCACTATGGACCACCGCATCGCTTCTTCAGACCTCTTTGA

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0043010 camera-type eye development biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-081104-199 Predicted to enable metal ion binding activity and transferase activity. Acts upstream of or within camera-type eye development and cerebellum development. Human ortholog(s) of this gene implicated in Gordon Holmes syndrome. Orthologous to human RNF216 (ring finger protein 216).

Ensembl:

ensembl_id ENSDART00000191948

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051941 lncRNA downstream 75612 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051940 lncRNA downstream 75613 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051942 lncRNA downstream 75613 40527468 ~ 40529775 (-) True XLOC_026667
TCONS_00051934 lncRNA downstream 200002 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053082 lncRNA downstream 200139 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00053084 lncRNA upstream 115598 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051957 lncRNA upstream 300758 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00051965 lncRNA upstream 737303 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA upstream 786374 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051968 lncRNA upstream 872462 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051936 mRNA downstream 75584 40526107 ~ 40529804 (-) False XLOC_026667
TCONS_00051935 mRNA downstream 75606 40526107 ~ 40529782 (-) False XLOC_026667
TCONS_00051937 mRNA downstream 77055 40526641 ~ 40528333 (-) False XLOC_026667
TCONS_00051933 mRNA downstream 303921 40296785 ~ 40301467 (-) True XLOC_026665
TCONS_00051932 mRNA downstream 320644 40277704 ~ 40284744 (-) True XLOC_026664
TCONS_00051946 mRNA upstream 21111 40679931 ~ 40681001 (-) True XLOC_026669
TCONS_00051947 mRNA upstream 31392 40690212 ~ 40768548 (-) True XLOC_026670
TCONS_00051948 mRNA upstream 162837 40821657 ~ 40837218 (-) False XLOC_026672
TCONS_00051949 mRNA upstream 167087 40825907 ~ 40836081 (-) True XLOC_026672
TCONS_00051950 mRNA upstream 217733 40876553 ~ 40896927 (-) True XLOC_026673
TCONS_00051939 other downstream 75609 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 75610 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 446701 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 516587 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 647914 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051964 other upstream 653202 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2207263 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3422803 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 6536317 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 8418942 49077762 ~ 49077879 (-) True XLOC_026748

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018528 False 2730 mRNA 0.48 19 CM030135.1 13648885 ~ 13727870 (-)