RNA id: TCONS_00053084


Basic Information

Item Value
RNA id TCONS_00053084
length 557
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_026671
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40774418 ~ 40777723 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcacaAGCCAGGAGTATGAAACCAAAGGAAGTGCAATATTTGCTTCCTCTGCTTTGAAGAGCTGAGCCAAAAGAGGCATGGATGACTGCAACAGGCCCACCACTGTTTCACTCAGTGGATCTTTGTTTTTGTATAGCCATCCTGCAACGCTCTATCCCACCTGGCATGTGTTGATATAATCAACATGTGACTTTCTTTGGCTGAGGATCCAGCAGTTCCAACATCATCAAGCACCAGTTCAAAATGGACTTCTACATCTTTGAAAATGCCTAAATTACATGTTACAACAAATGTCTTTTACTGATCTTGAAATCTTCCcaatcactagctatgtttccatccaatgatGAAAATTAAACattgaatattgcataaaaaatttgtaaataaagaaGGGATTGCCAAATTTGTAGACACGACTAGCAAAacacaatgccagtgactcacgatcCCCACATTTCTTGGAGGTgcttataaatatacaaatgttgcacacacaaaaataggCCTTTATAAacacgagcatattgacaacacaaaagagtgcaacagtctaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051941 lncRNA downstream 244642 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051940 lncRNA downstream 244643 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051942 lncRNA downstream 244643 40527468 ~ 40529775 (-) True XLOC_026667
TCONS_00051934 lncRNA downstream 369032 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053082 lncRNA downstream 369169 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051957 lncRNA upstream 181855 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00051965 lncRNA upstream 618400 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA upstream 667471 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051968 lncRNA upstream 753559 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051975 lncRNA upstream 1227497 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00051947 mRNA downstream 5870 40690212 ~ 40768548 (-) True XLOC_026670
TCONS_00051946 mRNA downstream 93417 40679931 ~ 40681001 (-) True XLOC_026669
TCONS_00051943 mRNA downstream 109505 40600770 ~ 40664913 (-) False XLOC_026668
TCONS_00051944 mRNA downstream 109550 40605119 ~ 40664868 (-) False XLOC_026668
TCONS_00051945 mRNA downstream 115598 40605388 ~ 40658820 (-) True XLOC_026668
TCONS_00051948 mRNA upstream 43934 40821657 ~ 40837218 (-) False XLOC_026672
TCONS_00051949 mRNA upstream 48184 40825907 ~ 40836081 (-) True XLOC_026672
TCONS_00051950 mRNA upstream 98830 40876553 ~ 40896927 (-) True XLOC_026673
TCONS_00051951 mRNA upstream 124020 40901743 ~ 40933415 (-) True XLOC_026674
TCONS_00051952 mRNA upstream 158371 40936094 ~ 40945710 (-) False XLOC_026675
TCONS_00051939 other downstream 244639 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 244640 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 615731 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 685617 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 816944 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051964 other upstream 534299 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2088360 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3303900 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 6417414 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 8300039 49077762 ~ 49077879 (-) True XLOC_026748

Expression Profile

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