Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051949 |
| length | 929 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 9 |
| gene id | XLOC_026672 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 40821657 ~ 40837218 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0034497 | protein localization to phagophore assembly site | biological_process |
| GO:0000422 | autophagy of mitochondrion | biological_process |
| GO:0044804 | autophagy of nucleus | biological_process |
| GO:0006497 | protein lipidation | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0000407 | phagophore assembly site | cellular_component |
| GO:0019898 | extrinsic component of membrane | cellular_component |
| GO:0034045 | phagophore assembly site membrane | cellular_component |
| GO:0080025 | phosphatidylinositol-3,5-bisphosphate binding | molecular_function |
| GO:0032266 | phosphatidylinositol-3-phosphate binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-488 | Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagosome assembly. Predicted to be located in phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WIPI2 (WD repeat domain, phosphoinositide interacting 2). |
| ensembl_id | ENSDART00000143135 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053084 | lncRNA | downstream | 48184 | 40774418 ~ 40777723 (-) | True | XLOC_026671 |
| TCONS_00051941 | lncRNA | downstream | 296131 | 40527285 ~ 40529776 (-) | False | XLOC_026667 |
| TCONS_00051940 | lncRNA | downstream | 296132 | 40527285 ~ 40529775 (-) | False | XLOC_026667 |
| TCONS_00051942 | lncRNA | downstream | 296132 | 40527468 ~ 40529775 (-) | True | XLOC_026667 |
| TCONS_00053083 | lncRNA | downstream | 420873 | 40403056 ~ 40405034 (-) | True | XLOC_026666 |
| TCONS_00051957 | lncRNA | upstream | 123497 | 40959578 ~ 40962832 (-) | True | XLOC_026677 |
| TCONS_00051965 | lncRNA | upstream | 560042 | 41396123 ~ 41512210 (-) | False | XLOC_026681 |
| TCONS_00051966 | lncRNA | upstream | 609113 | 41445194 ~ 41512210 (-) | True | XLOC_026681 |
| TCONS_00051968 | lncRNA | upstream | 695201 | 41531282 ~ 41535761 (-) | True | XLOC_026682 |
| TCONS_00051975 | lncRNA | upstream | 1169139 | 42005220 ~ 42032476 (-) | False | XLOC_026685 |
| TCONS_00051947 | mRNA | downstream | 57359 | 40690212 ~ 40768548 (-) | True | XLOC_026670 |
| TCONS_00051946 | mRNA | downstream | 144906 | 40679931 ~ 40681001 (-) | True | XLOC_026669 |
| TCONS_00051943 | mRNA | downstream | 160994 | 40600770 ~ 40664913 (-) | False | XLOC_026668 |
| TCONS_00051950 | mRNA | upstream | 40472 | 40876553 ~ 40896927 (-) | True | XLOC_026673 |
| TCONS_00051951 | mRNA | upstream | 65662 | 40901743 ~ 40933415 (-) | True | XLOC_026674 |
| TCONS_00051952 | mRNA | upstream | 100013 | 40936094 ~ 40945710 (-) | False | XLOC_026675 |
| TCONS_00051953 | mRNA | upstream | 100016 | 40936097 ~ 40945724 (-) | True | XLOC_026675 |
| TCONS_00051954 | mRNA | upstream | 111880 | 40947961 ~ 40955780 (-) | True | XLOC_026676 |
| TCONS_00051939 | other | downstream | 296128 | 40526882 ~ 40529779 (-) | False | XLOC_026667 |
| TCONS_00051938 | other | downstream | 296129 | 40526879 ~ 40529778 (-) | False | XLOC_026667 |
| TCONS_00051924 | other | downstream | 667220 | 40154294 ~ 40158687 (-) | True | XLOC_026658 |
| TCONS_00051921 | other | downstream | 737106 | 40088685 ~ 40088801 (-) | True | XLOC_026657 |
| TCONS_00051914 | other | downstream | 868433 | 39957358 ~ 39957474 (-) | True | XLOC_026654 |
| TCONS_00051964 | other | upstream | 475941 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
| TCONS_00051981 | other | upstream | 2030002 | 42866083 ~ 42866200 (-) | True | XLOC_026691 |
| TCONS_00052007 | other | upstream | 3245542 | 44081623 ~ 44094226 (-) | False | XLOC_026707 |
| TCONS_00052055 | other | upstream | 6359056 | 47195137 ~ 47195234 (-) | True | XLOC_026732 |
| TCONS_00052070 | other | upstream | 8241681 | 49077762 ~ 49077879 (-) | True | XLOC_026748 |
