RNA id: XM_021581076.2


Basic Information

Item Value
RNA id XM_021581076.2
length 4084
RNA type mRNA
GC content 0.44
exon number 5
gene id gprc5c
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 42731828 ~ 42750071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAAAAAGATCCTTGTATTATTCTATTTACAGTGACACTCAACCCTGTTGGTATTAATCAaaatggtgtttgtgtgtgtttgagagagaagagagagagagagagagagagagagagaaggcagtcACTATCCAGGGACTAATTGCTCTGCATGAACAGCTCTAGAAGCCTAGTATTGTGAGATCCAACTCCGACTTAAATATTTCAGAATTGACCAAAAGCAGAGATTGCAGGGTAATTCAAAACCACTAGAAACGGAATATAGGCAACATTTTCAAAGAGCTATCAACTTTTATCCCACTGGATGTAGGCTACCTGGGGACAATGTAGAGCGCGTTTTTTTTGTCAGTGTGGGTTGGAACAGGTGAATTGCAAGTAGCGACAATATCAAGGACCACCAAGAACAACAAAAATTTACAACAGTCAGACATCTGAAGGTTCTGCTGAATTCCATGGATCGGACACTCAAGAGGCTTCATCTCCTTCTGCTCCCGACCGCTGTCACTTTCTggtctctccccttctctatgGCCACCAGCGTGGCCCCAGGGGGATGTGGCTCCAATGTAGGCTCCCTGTACTATAGCCTGTGTGACCTCAGTGCCGTATGGGGCATTGTACTGGAGTCATTCGCGGCGGCTGGCGTGGTGGGTTCCATCATCCTCCTCATCGTCCTCCTGGCCAGCCTACCCTTCATCACAGACAAGAACAAGAGGAGCTCCGTGGGGCTCCATGCCTGCTTCCTGATCTGTACCCTGGGCCTCTTCTGCCTCACTTTCTCCTTCATCGTAGGGAAGGACTTCGCCACATGTGCCTCGCGGCGCTTCCTCTTCGGGGTGCTGTTCGCTGGGTGCTTCACGTGTCTTCTCATGCAGTGTGTGAGGCTGAACCTCCTGGCCCGCAGGGGGGATCAGGGGCCCCGGGCCTGGGTTCTGTGTCTGGGAGCCCTGGGGCTCTGGCTGGTGGAGGTGGTCATCAACACAGAGTGGCTGATCATTACCATTGTTCGCTACCCACTGTCACCGCTCAACGTTACTGGGACAGCACTAGGCACGGCCGACGACGTGCCATGTAACATCGCCAACCAGGACTTTGTAATGGCGCTGATCTACGTACTGAATCTTCTCCTAGCTGTCGTAGTGGCATCCTTACCCTCCCTGTGCGGGAAACACAAGCAGAGACGCCAGGAGGGAGCAATACTCCTCGTCACgggtctcctctctgtgttcatCTGGGTGGCCTGGATCACCATGTACGTCTGGGGGAACCTGACGACCGGTGGACCCAGCTGGGATGACCCTACCCTGGCCATCGCCCTGGTCAGCAACGCCTGGGTGTTCCTGGTCCTCTACACCATCCCAGAGATCTGCTCTCTGACTCAGGAGGACGGGGGGGCGCCGGGGTTCAGAGAGGACCTGTACCCCAGTATAGGGGTGGGCTACGAGACCATCCTGAAGGATCAAGGAGCCAAGAATATGTTTATGGAGAACAAGGCTTTCTCTATGGATGAAAACTCAGGTCCGAAGGTTGTGTCCCCATACAGTGGCTACAGTGGTCAGCTCCGCAGTTCTGTCTACCAGCCCACAGAGCTAGCTATCATTAGCAAGGGAATGGGGAATCAGGAAATGTCCTATGAGTCTCGCATCCCCCGAGCCTCCATCAACAACAGCTCCCCGGCCCACAGCGGGGGCAGTACCCTGGTAATGGACTGCACAAGAAATCCCAGTGGTGAACACAGACTTTAcgttacacctctctcctcaagaCATTTTTGTTCATCCATTTTATTCAAATCTGTTGACTCTATTTTGCTGTTTTCCATTGGATTCTTAATATGAGCTGGCTCTAAAGCGACCAGCCTATCAGACTCCAGAGATGACGTTTGGGTGATCGATACAAACAATTTGCCTATCTATAAATGGACAGTCCTGCACAGCAAAATCAATGGTGTACATTTAACTCTGAAAGTGTTAAATGTACACTATTTTCAGTGAACATATGAGTCCCACTGACCCGGTGTTAATATAACACTTTTGAAACTGTTAAAGATTGAACTCTGTTGCAGTGTTCCCCATTCAACTCTTAAACTGTTCATAGGAACTTGATTGTGGTGTTTGCATAGCTCTACTGTAGAGTATTATGCAACACCTACAGAGTAAAACATAACACTAGACAAATTTGCttatttcccagagtgcctttTCTTTTCAAGTGAATTGTAAAGTTaacacccatgactgtatttgttaacGATAGAGACATGCTTACTGAATTTAATTTAAAAGGCCTGTATCTTTCACCTACTGAGTATCTAAAACTATGACTCTATGATAGTACATGTATCATGACCTAGTTtcatcctaacacagaggtgttAAGAAAGTCATGGTTTGCACACCAAATCAGGCCTGCAAATTACATTATGCTGGCTCTcgaagtgatgtgtaattcctattgaaaTCCAGCCAGAGTTGGGATATACTATAGTTAAAATTGTTATTCACttgcaacctgcattcagaatgattgTCAGGGTTCTTCTTCTTTTGAAAATTGATAAGACTACCTTAACCATTTAAACTGAAACAACAATTTTagtaacgggtgcaataaatTTAACTAAGTGATTgtattagtttagaaaaatgtgtgttatttatctttgtgtagtttaagattaatcaatcaatgtacatgtaaAAACACAGACATTAAAAGCAATCCTAAAAAATCaacctgcagtagagcatgctgggaaatatgataatgatagGCGTGCTTTTGATGGGACTGTTTAACTCTCCACAGTGTAAAACAATAACTATGCTTATTAACACTAACACTTGGGGATATTTTACCCAACTGAGTGTTACTTTCACTCTTACAGAGTGAATTTATCTCCTGAATAAACACAAGAAAagttacactgaaaaatcaacactggccaatttgctgtgtgtgtttgacatAACCCTCTATAGATCAAAGCAACCTGCAGTCAAAGCAACCCACAGAGCAGACGGTATACCCATGGCTTAGGGAGAAAACAATATATTTTGTTAAGGTTACCATTCCTCTCACTGTGAACTGAGCTAAGCTCTTCCGCTGGACGTACTGTGACAGATGAACTGTGAGCATGCTGGAATGGTGGGAAATTATAGTCAGACTTTCTCTCTACATGTGGGTATTTTGGCAACAAAGGTGGCTATAtagtaaacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcagatggAAGTGCAGCCAACGACAAGATCAGTCAAGCGAGCGGCCAACAGGTGTGACGGTGTCATGGGATTTACCTGCCATCCCTGGGTTCCCAGAGGAGGACTCATTAAGAGTGGAAAATTCCATATCTGGAACATCTCTATGGTTCCATGGAATCTTGGGAAAGGACTCTTCTGTCTCTGGGATAACAACTAATATGAATACACTTAGTTATAGGTTAAGCATTCAAATAGTGTGCACTTGCTTGCTTTAAATGAAGTAAGGGCCAATATTATTAAATCAAAATCCAATCAAatctcattttatttgtcacgagcgccgaatacaacaggtatatagaccttacagtgaaatgcttacttatgagcccattcccaacagtgcagttttaagaaaatacctaaaaactGTCAATGTTTAGTGCTTAGCTTGTGGATATCACTTTCATAAAGTTCACATAGCTATTTCAGTTGTAGCTAAAGGGTGTTGAATGAGTTCATGTAAATACCATGCCAATGAATGTCTcctcactacatactgtatggatGGAAGCACTTGTATGAACTGTTGTATgaatttgaaatatatttttaacaTAGCTATTTACAGTACTTACTTTTTTATCAAATCAGATTTGAGCCTACACTTGTAATTGCAATCCTGAAATGTAAATCTAATATGAAGTTTAAAAACCATAATTAATTATTTGATTGCACATTCTGTATCAACAACCATTAATGTCCCAAATAATAAAGATTCACTGGTGAAATACATAA

Function

GO: NA

KEGG:

id description
K04620 GPRC5C; G protein-coupled receptor family C group 5 member C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2136939 lncRNA downstream 7665 42723648 ~ 42724163 (-) True G1867778
TU2136938 lncRNA downstream 11268 42717183 ~ 42720560 (-) True G1867777
TU2136975 lncRNA downstream 15358 42716132 ~ 42716470 (-) True G1867814
TU2136935 lncRNA downstream 72443 42654504 ~ 42659385 (-) True pde6gb
TU2136903 lncRNA downstream 115873 42614158 ~ 42615955 (-) True rnf213b
TU2136985 lncRNA upstream 8695 42758766 ~ 42759065 (-) True G1867824
TU2136986 lncRNA upstream 9383 42759454 ~ 42759750 (-) True G1867825
TU2136992 lncRNA upstream 17091 42767162 ~ 42767582 (-) True G1867831
TU2136994 lncRNA upstream 18195 42768266 ~ 42768526 (-) True G1867833
TU2136996 lncRNA upstream 20642 42770713 ~ 42770924 (-) True G1867835
XM_021581075.2 mRNA downstream 72392 42654504 ~ 42659436 (-) False pde6gb
XR_005039200.1 mRNA downstream 79962 42623527 ~ 42651866 (-) True LOC110502791
XM_021581074.2 mRNA downstream 79969 42620672 ~ 42651859 (-) False LOC110502791
XM_036960493.1 mRNA downstream 112919 42565211 ~ 42618909 (-) False rnf213b
XM_021581425.2 mRNA upstream 22821 42772892 ~ 42790188 (-) True gpr142
XM_021581081.2 mRNA upstream 267480 43017551 ~ 43026440 (-) False LOC110502797
XM_021581082.2 mRNA upstream 280762 43030833 ~ 43046285 (-) True LOC110502798
XR_005039247.1 mRNA upstream 439367 43189438 ~ 43204118 (-) False LOC118943900
XR_005039248.1 mRNA upstream 439367 43189438 ~ 43204118 (-) True LOC118943900
TU2134138 other downstream 2546616 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 2546616 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 3278413 39449397 ~ 39453415 (-) True G1864033
TU2130947 other downstream 4574619 38156749 ~ 38157209 (-) True G1862272
TU2129907 other downstream 5396414 37335027 ~ 37335414 (-) True G1861368
TU2137175 other upstream 165335 42915406 ~ 42978144 (-) True G1868010
TU2138185 other upstream 736797 43486868 ~ 43501433 (-) True G1868940
TU2141784 other upstream 3277849 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 4047164 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 4191215 46941286 ~ 46942457 (-) True G1873030

Expression Profile