RNA id: XM_021581082.2


Basic Information

Item Value
RNA id XM_021581082.2
length 2107
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110502798
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 43030833 ~ 43046285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGGTTGATTCATTCTTGCAGGCACGGACGTTGTTGCACCTGTGCCAGTCTCTGCTTTGGTAGCAGTCTCACTCACAGATTGACGGACTCCGGACACTGATTCATCAACTACTTATGTAACAGATCTTACAGGATGAACAAAGAGTACACCAAGGTCAGTCCCTCTGATCCCTCCGTAAACGCCTACACCACCACCCTGTCCACTGTGAAGGCCGAGATCGACTACAAGCGCAAGAAGTGCCGCTACGTCCGCAAAGATGGCAAGTGCAATGTCCTGTTCCGCCATGTTCCTGAGGAGTGGCTCATGTATGTCACCGACATCTTCACCACGCTGGTGGAGATCAGATGGCGCGTCATGTTCCTCATCTTTGCCCTCTCCTACATCTTCTCCTGGCTCTTCTTTGGCATCATCTATTGGGTGATTGCCATGGCTAACGGCGACATGAAAGACCCTACTAACGCCCCCTGCGTGTACGAGGTGAGGGACTTCACTGGGGCTTTCCTCTTCTCACTGGAGACCCAGACCACGATCGGTTATGGTTTTAGAGGGATGTCGGAGAACTGCATGGTGGCGATCATCGTTGTGACTGTGCAGGACGTCATCAGCTGTTTTATTGACACATTTGTCATTGGTATCGCTGTGGCGAAGATGGCATCGGCACGGAAACGGGCGCAGACGGTGGGCTTCAGCAACTGCGCCGTCATTAACTTGCAAAATGGGCAGTTGTGCCTGTCTTGGAGGATTGGGGACTTCCGCCGGCACCACATGGTGGAGGGGAAGGCTCGCGCCCAAATCTTCCGCCCCAACATGCACGCCACAGGCACGGAAGATGTCAACTACAAGGACCTGGAAATCAAACAGAGTGATTTAATTTTAGCGATACCAACCACCATCATCCACGTTATTGAGCCAAGTAGTCCACTCTACCGCATGAGCCTAGAGGATCTTCGGAAAGATGACTTTGAGTTGGTGGTGTCCTTCACCTACACAGATGACTCGACGGGCATCCTGCACCAGACCCGCACCTCCTACACGCCCGACGAGATCCACTGGGGACATCTGTTCCAAGAGATGCTGAATGTTAACCGGAGGTACTACAAGGTAGACTACTCCATGTTCCACCACACTGCTAAGGTCCTGGTTCCGGAGGTCAGTGCAGAAGAGTACGAGCAAATGAAGCTTGGGCATTACCCACGCAACTCGCCGCGCCCCAAGCGCCCATGCATTAATCGCAAACCCCCGACTGTGACTGTAGAACTGGTGAACGGCACCCCAGAACCAAAGGAACATGTAGCCATGGTTGCCACTATTGCAGCAGTTTGTGAGGATCACGGACATTTGTGTCTTACAAGGAACCCCGTTCTGACATAGATGTTCTACTGATATGATGATGCCAACACAGTGATCAATGGCCATTCAGAAACATATGAACTCATGGACAATTTGATAATTTCTTCATAGGCAACAGTAAGAGCAGGCTGTGTACTTAGTGGAATTTCTTGCAGGAAGTAACCCCCCcaacccgcacacacacacacacacaaatgtggaAACTGCTGTCATGTTGCTTGCTAAGTTTTTTTACTATCTATGGTGGAGTCACAATATATAAATCAAACAATTATACAATGTCTGCTCCTCAATATGATAGATAGGCTACTGAAATCAAAGAGATACAGAAAATGAATAAAAATAAGATAATCATGATTTTTATGGAGAGGTTATGGTAACTTAGTACTGTCATCTACAACAGAAAGTACTATATAGAGATGCATTTATTTTCAGAATATGTTTTGATGTGTGAGATaaaatgcttttttttattttgtgagTGCTTTGtaaaatatgtacagtgccttcagaagtaccccttgacttatttcacattttgttacagcctgaatacaaaatggattcaatatttgtttctcacccatctacacacaataccccataatgacaaagtgaaatcatTTAGAAATGATTGCAActttatttaaaatgaaatacaaaaatatcaaatttacataagtattcacactcctgagttaatacatgctagaatcacctttggctgtgattacagctgtgagtctttctgggt

Function

GO: NA

KEGG:

id description
K05009 KCNJ16, KIR5.1; potassium inwardly-rectifying channel subfamily J member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2137292 lncRNA downstream 7229 43023385 ~ 43023604 (-) True G1868122
TU2137289 lncRNA downstream 12448 43017699 ~ 43018385 (-) True LOC110502797
TU2137251 lncRNA downstream 31702 42998899 ~ 42999131 (-) True G1868083
TU2137241 lncRNA downstream 41668 42988929 ~ 42989165 (-) True G1868074
TU2137227 lncRNA downstream 52395 42978176 ~ 42978438 (-) True G1868060
TU2137329 lncRNA upstream 1747 43048032 ~ 43048254 (-) True G1868159
TU2137341 lncRNA upstream 11420 43057705 ~ 43057943 (-) True G1868171
TU2137342 lncRNA upstream 12290 43058575 ~ 43058800 (-) True G1868172
TU2137354 lncRNA upstream 18856 43065141 ~ 43065346 (-) True G1868184
TU2137475 lncRNA upstream 116499 43162784 ~ 43163016 (-) True G1868302
XM_021581081.2 mRNA downstream 4393 43017551 ~ 43026440 (-) False LOC110502797
XM_021581425.2 mRNA downstream 240645 42772892 ~ 42790188 (-) True gpr142
XM_021581076.2 mRNA downstream 280762 42731828 ~ 42750071 (-) True gprc5c
XM_036960496.1 mRNA downstream 280768 42731828 ~ 42750065 (-) False gprc5c
XM_021581077.2 mRNA downstream 280821 42731828 ~ 42750012 (-) False gprc5c
XR_005039247.1 mRNA upstream 143153 43189438 ~ 43204118 (-) False LOC118943900
XR_005039248.1 mRNA upstream 143153 43189438 ~ 43204118 (-) True LOC118943900
XM_021581087.2 mRNA upstream 205016 43251301 ~ 43265187 (-) False exoc7
XM_021581088.2 mRNA upstream 205016 43251301 ~ 43265187 (-) False exoc7
XM_021581090.2 mRNA upstream 205016 43251301 ~ 43265187 (-) False exoc7
TU2137175 other downstream 52689 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 2845621 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 2845621 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 3577418 39449397 ~ 39453415 (-) True G1864033
TU2130947 other downstream 4873624 38156749 ~ 38157209 (-) True G1862272
TU2138185 other upstream 440583 43486868 ~ 43501433 (-) True G1868940
TU2141784 other upstream 2981635 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 3750950 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 3895001 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 3914337 46960622 ~ 46961653 (-) True G1873043

Expression Profile