RNA id: XM_021581094.2


Basic Information

Item Value
RNA id XM_021581094.2
length 2838
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110502801
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 43277974 ~ 43303118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACTCCAGAGGGATCCAGGAAGAAACTGACACGGGTTAGCCAGAGGCAGATGCAGAACGGAACAGGAGCGGCTGAGGAAGTTAGTctcagagagagtaagagagcagAGGAaactactgtagagagagacatggcAGACACAGAAAACGAGTCAAAATCCAAACCAGACCAGAAACTCTGCTGCACTGTGTGTTCCAGTGCTCTCAATAAGGATAAGCTCGCTACCTGTGGCCACTCAGTCTGTGCCTCCTGCTTGGGGAAGAAAGGTAAAGGCTGTCCTGAGTGTCTACAGAGCTCTGGCAAGCCTGAAACTGCACCTGTGGAACAGAATGGAACGTTGAATGGAATGGTGGCTGAGTCTCCACCGGTGATCAAACCCAAAGAAAAATATGAAAAGGACATAGAAGCCCAGGATTCAAAGACCGCAGAGGAAACAATGATAAAGGAAGACCTGAAGGAACCAGAGGACCCTaaaaaaacagaggaagagaaaaggaaagagaaagagagtgacccTCCACAGCCTGCAGAGGAAGTGAATGAGGATGGGGTGAACAAGAAATCAAAGGAAGGGAAAGCAAAAGAAGAGAACGCAAAGGAAGAAGACAAGGCAAACGAAGAAGAGGTCAAGGAAGAGGTGAAAGTAGAGTCGTTGGGACTCGATGATGTTGTGTGTGACTCATGTATGGAGACGAGCCCGTGCATGGCCCTAAAGTCGTGCCACACCTGCCTTGTGTCCTACTGCGAGGCCCACCTCAGGCCCCATTTGGAGAACCCCAAGTTCCAGAACCACCGTCTGGTGGAGCCGCTGAGGGACATCGAGAGACGGACCTGTGAGATTCACAAATGGTCCCTGGAGCTGTTCTGCTGTTctgatgctgtgtgtgtctgtcaggacTGTGTGACAGAAGACCATAGGGGACATAACACTGTTCCTGTGTTAGAGGCGCGCAGAACCATAGAGAGGGAATTACGAGATAAACAAACAGAGATGGTGAAGACAGTGGCGGCAGCAGAGAATGCCATCAACCAACTCCAACTCAACACGGTTTCCTTTGAGAATTCAGTGATGGTGGTCCGTGAGGTGATTGACAGCCAGTTTATGGAGCTGCAGGCTGCGGTGGAGCGGGCCAAGAGAGAGGTGACAGAGATCCTGGAGGGAGAGGACAAGCAGGCTCTCAGACAGACCGAGGGGATCAAGGTACACCTGGAGCAGAAGTGCACTGAGCTGAAGAAGACACAAGAGCAGTTGAAAAAGCTCTCGAAGAACAAGAACGACGTGGACTTCCTACAAGAGTACTCTAAATGGAAGAAGGACAGCCCTGACATTACCCTACCTGGGTTCTACATCGGCCTCATAGACCGGCTCAACTCCTTCAGCAGAATAATTGTTACCTCCACACAGGAGCTGTGTGAGAAGCTGCTGTCCAATTACATAGAGACACTCAAAGAGACCTGCAAAAATGACAAGATGGGGATAAAAACCACAGTCCATGAAACAATCGCAGCCAAACAGAACATGACTTTGCCAGACCCAAAGACGCGGGATGACTTCCTAAAGTATGCCGCGCCTGTGAGTTTTGACGCAGACACGGCCCATAAGTTCCTGCGTCTGACTGAGAAAAACAGGAAGGTGACCAACACCACACCCTGGCAACACCCGTACCCCGATGTCCCTGAGCGCTTTGAGAACTGGCGCCAGGTACTGGCCACAGAGAGCTTCTATGTTGGTCGACACTACTTCGAGGTGGACGTGAGCGGTGAGGGCACGTATGTCGGACTCACCTACAAGAGCATCGATCGCAAGAGCCCAAAGAACAACAGCTGCATTACCGGCAATGACTTCTCATGGTGTCTACAATGGAACGGCCGCAGCTTCTCTGCCTGGCACAGTGATGTGGAGACGCCTCTGAAAGTGGGGAAGTTCACACGTATTGGGGTCTATGTGGAATTCAGCTGTGGCCTACTGGCCTTCTATGGGGTGGATAATGCTGTCGGCATGACCCTCATTCACAAATACAAGGCTGACTTTCTGGAGCCTCTTTACCCAGCCTTCTGGCTGTCGAAGAAGGAGAACGTGATAGAGCTTGTTGGACCTGGGGAGTCGCTGACACTGAAAAGCCCCTCTCCTCCTAACTCACCCCCAAACACTGATGTTGCACCCCCCAGCCGTTTCACAGTATCTTCTGTTGTTGATCAATGATTCATTTGTCAGTGGTAAATTTCCCGTCAACCCTAAAAAGAAATGGAAAAGGAAAACGAAACGCATCAGCCGGCCCCATACTTGTAcatatacttatgtaaatatttctgtttttatttttaatacatttgcaaagatttccAAAACCTgttttccactttgtcattatggggtattgtgtgtagattgatgaggggaatttttcatttaatccatttcagaataaggctgtaacgttacaaaatgtggaaaaaggggtctgaatactttccgaatgcactgtatatcccaATAAGGTGACAATAAACCTCACTAGatttgtaaattattttctaCATACCATTTGCCTTTGTCAATGGTATATTGGAGgcaaagtcaggtgcaggagagcagagtataaTGAACAGGCGCACTTTTATTAAAGTTCCAAAAACAAGAGCACTACATAAATCAAACACGCTCAAAAAACGGAACATAAAAGTAAAGCGCTTAAACTAACACCACATAACATgacacaattacacacaaaacatgatgggaaacagagggttaaatacaagtagattgattggggaaatgaaaaccaggtgtgtatggaaacaagacaatacaaatggatatatgaaaaatgga

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12006 TRIM16; tripartite motif-containing protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2138051 lncRNA downstream 1283 43274964 ~ 43276691 (-) True G1868810
TU2137529 lncRNA downstream 66348 43211406 ~ 43211626 (-) True G1868353
TU2137480 lncRNA downstream 111866 43165901 ~ 43166108 (-) True G1868307
TU2137475 lncRNA downstream 114958 43162784 ~ 43163016 (-) True G1868302
TU2137354 lncRNA downstream 212628 43065141 ~ 43065346 (-) True G1868184
TU2138086 lncRNA upstream 26168 43329286 ~ 43330086 (-) True G1868842
TU2138149 lncRNA upstream 135655 43438773 ~ 43440952 (-) True G1868905
TU2138170 lncRNA upstream 162858 43465976 ~ 43527171 (-) True G1868926
TU2138357 lncRNA upstream 416721 43719839 ~ 43765207 (-) True G1869102
TU2138369 lncRNA upstream 432424 43735542 ~ 43798670 (-) True G1869111
LOC110503118 mRNA downstream 7414 43266226 ~ 43270560 (-) True LOC110503118
XM_021581093.2 mRNA downstream 12786 43251301 ~ 43265188 (-) False exoc7
XM_021581096.2 mRNA upstream 10615 43313733 ~ 43356243 (-) True LOC110502802
XM_021581097.2 mRNA upstream 55608 43358726 ~ 43390491 (-) True LOC110502803
XM_021581098.2 mRNA upstream 105704 43408822 ~ 43433739 (-) False LOC110502805
XM_021581099.2 mRNA upstream 105704 43408822 ~ 43433739 (-) False LOC110502805
XM_021581100.2 mRNA upstream 107785 43410903 ~ 43433739 (-) True LOC110502805
TU2137175 other downstream 299830 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 3092762 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 3092762 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 3824559 39449397 ~ 39453415 (-) True G1864033
TU2130947 other downstream 5120765 38156749 ~ 38157209 (-) True G1862272
TU2138185 other upstream 183750 43486868 ~ 43501433 (-) True G1868940
TU2141784 other upstream 2724802 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 3494117 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 3638168 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 3657504 46960622 ~ 46961653 (-) True G1873043

Expression Profile