RNA id: XM_021581145.2


Basic Information

Item Value
RNA id XM_021581145.2
length 5023
RNA type mRNA
GC content 0.44
exon number 13
gene id snx5
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 44758535 ~ 44773318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTTATCTGTCATGAGACAGGAAGAGCAAAACGGGGGTTGTTTCCAGAAGATAGCGAATATAGCTAGACTTGCAGCACAGCACGACGATCTGCAGCGTTGTTGTACTTTTATAATCATGACATCTACTCTTGATGATAGCGAAAAAGAAAAGGCACGCTCTGTGTCTGTGGACCTTAACAACGACGCTTCTCTACTCATCGACATTCCTGATGCACTCTGTGAACGTGACAAAGTCAAGTTCACTGTCCACACCAAGACCACCCTGAGCTCCTTCCAGAAGCCAGACTTCTCTGTTCCTAGGCAACATGAGGACTTTATATGGCTCCATGACGCGCTGGTTGAGACTGAGGACTACGCTGGGCTCATTATCCCTCCAGCCCCCCCGAAGCCAGACTTCGAGAGCCCAAGGGAGAAGATGCATAaactgggagagggagaagcCACCATGACCAAGGAGGAATACACCAAGATGAAGCAGGAGTTAGAGGCTGAGTACCTGGCTGTATTTAAGAAGACTGTACAAGTCCACGAGGTATTCCTGCAGCGACTATCTTCTCACCCGATCCTGAGCAAGGACAGAAACTTCCAGATATTCCTGGAGTATGACCAGGATCTGAGCGTACGAAGGAAGAACGCCAAGGAGACGTTTGGGAGTTTCTTTAAGAACATGGTCAAGAGTGCTGACGAGGTCATCATCTCTGGGATAAAGGAAGTCGATGATTTCTTTGAGCAGGAGAAGACCTTCCTGCTTGATTATTCGTCCAAGATCAAAGACTCCACTGCCAGGGCAGAGAAGATGACCCGCTCTCACAAAAATGTTGCTGATGACTACATCCACATCTCTGCCACTTTGAACAGTCTCTCTGTCGATGACAACACCGCACTTAAAAAGCACCTTGAGAAGTTTGCAGACCTGTTTGAGAAACTAAGGAAAGTGGAGGGCAGAGTGGCGTCAGATGAGGAGCTGAAGCTCACGGAGCTGTTCCGTTACTACATGCTGGACATCCAGGCAGCCAAGGACCTGTTGTACAGGCGGGCCCGGGCCCTGGCTGACTATGAGAACAGTAACAAGGCCCTGGACAAGGCCCGGCTGAAGAGTAAAGACATCACCCAGGCTGAGGAGCACCAACAACAGTGTCTGCAGAAGTTTGACAAGCTCTCTGAGTCTGGAAAAAGAGAGCTGACCAGTTTTAAGGGCAGGAGAGTGGTGGCTTTCCGTAAGAACCTAATAGAGATGTCTGAACTGGAGATCAAACACGCCAAGAACAACATGGCTCTGCTGCAGGGCTGCATTGAGCTTCTCAAGAGCAACTGaacctcctgtctcctaccaatCCTCCCAGACCGCCAGACCACCACCCACTGACCggctagcctgggtgccagtctgttttttgctgtcttgccaactccgtACGGAACTGTCATGCAGAACCGTGCCAATGGCGTAGGCAAAAGCACAAAcggatctggaaccaggctactgACCCAGCCTTTGAGAAGGGAACCTGGATACCCCTTCCCACCACACTCTACCCCCAGGGGACCTTGGGTCGTGTTCATGCACATGGTAGAAAAACATACATTTGCAAAAGAAAGGGAGCCTTTCTTATTGCACAGGATTAGATAGTCCCTCACCGTTTCACTCGATTTCGGAGCATTCTGTGCCTATTAAACACGATCCTGGGTACCTCCACCCTCAAATGATGCCATTTCAGAAACCTGCACAGGAACCTGCAAGCCGTCTGTTTGCAGTCTGCCTGTTTTTTTAGTCTGTCTCAAGGTTTACATAGTCCCTGGCAACCCACCTCTTTCTACTCCGCCTCATGTCCCATGGAACACTCACCTTTTGTGATGCCAGCAATGCGGAACAGGGAGAATGTAGCCGCTTGCATTGTCTTCTGATATTCCTCTTCATCTGGGCGcctttgtaaattcactctggcgatctactccgatttcagagagCTCTCGTCTAAGTGTGCCAGaatgcagaataactgatgaatgaATGcatgctcaacacctgttgatTATGGCCGGTGTCcgtaaacattggcaaaaaaacgtatttcaattgctgcacagttagtcaccaacgctctatAACGTGAAAACAGCCTAACCTCCTCTGACCactttacttgccctagcagagtgAGGTTTTCTATCATTTATGTCTGGAAGTAACTAGCAAGCTAACTTACTTTAGCCAGTTagcaatctgacaacgctctgaatttatgaacgctcCGAGCGCACTCTTGAGGGCCCTTTGGCattccagagtgaatttacgaatgcaCCCATAGATTGTGATACATTTTTTTCTATTCTGGATGGATTACTCTATCCTTGTATTGTATTTTCCATTTTTAACGATGttgattgtagaataatagcctCGTTGTGATGTTTTGCTTGCTTTTCACGGCACACTCTAACTAACCCCGTTAGGTCCCGCACTTTTTTATACGTAAACGCATAcatctgggtcgtgttcattagggaaCTCTGTAGCAAACCGTTTTGCAACAGAACACAAGTGTTTAATTTAGGTGGAATTTGGACCTACTAAATGTGGATCTGTAGCTTGAATGTGAATCTGTAGAGTTTAACTAGGCAGAGTTGTTTTGGAATAACCTGAGGTTTTTATGGTGCGGGTATAGCTATCTATAATTGTTTCTTATTGCAACTCCACTTTAAACCAGAAATACTCTGAGGAATCACATAGTGAATAACTGAGCTCAGCTACGGCTTCTCTGGTTTGTAATGGAACAGTTTAAAAGGTCCTATTCATTAGGCCACtgtgtagcaaaacattttgcaatagaaaatgaaaacaatttcttattggacaagttcagattTTCCTTCGGTTTTGTGCCTAGGGAATGCGACTCAGATGGCGCAACTGTTCATAAAGAACATATAAAGTGgatggaaaagggagagagattaaCTTAGTGCCTAAATAAAGGTCCTTATGACTGCGTCCCAGTTGTCCACCTTTCTACCgaagtgtgcacttgcacactcTCGCCCTGGATTTAAATACATTGGGTTGATATAAGCATTGGCTGATGCGAGTTTCCACCACTGTTAAATCCATGACAAGAAGTGGGAGAAGAGTGGAGAATTgggatttatatatatataatctgagATTAGTCTGGGCCAAACTCAAACCACCAGTAAAGTGAAGTGCTCTTTTTCATGGTTAGGAACGCTGAGTAGACActagtgtgtgtggtagtgtatcTATACTGTGTGGTGCGACACAAATGCTTTGGCCGTTCCTCAGGAATGGCTACATGGCTCTTCTCACATTTGTCTACATTACTCACAGTAACTGGAGCTAAATTCTTAAGATTCACATTGCTTTTGACAAGTTTACTTACACATAATATGGACCAATAGATTATTTTCACCACAGCCCTTGTGAGTGTCAGGACTGGTAGTTGTCCCTTTATCAAAGTTGACTGCCAAACATGTGATACgtgactttattttatttttaccccccACCCTCTCTTCAATCTGCTATGTCTAGTGAGTGCCAGGGAGCACTGGTTTCTGTACTCATTGAGTGAATGTTCAGTGGACTAGTTTGAGTTAGTGAAGTCCACCCGTAGTAGCTGACTGTACTGTGTACACGTGACACACTGCTGTGTGGGTGAGGCCAGCAGCAGGTCCTAGTCCACTCACCCTTCAGCCAGTTGCTCTAGAGAATTTCCATAGTAACGGCATTATACTCAGATGTTTCACTTTaactttgtttggtatacattttAAGTTAAACATTGACATTTCCACTGAAAAGTTTACAAAAGCATattttacaggaagaactgtgtagatatgtttggtaacagaataaaaCAGATTTTACTGTAGTTCTGTTACCGAACTTTGCATCTGCCCAGTTTATCCAGTAatttatttctctaaaatgtttaaagtagttgtatggtttgttaaacttaaTTAATGGATTTTGCTTGACATACATTTGAAAGTTACCGTAGGATTGCGCTCTGTCAAGTCAGCCCAATCATTACATTGCATATGTAGCCTGGTCAGTTGGGAAGCTTCAAGCATTATATAGTTAACATTAAGCAAGCATCAAGCACTAGACTTATATTGGCTATTGGAGAGTAACTCTGGTCCTAGCACTTATTCAGAGGAGTTTGACTGACTCATGTCCTTCAGCATCTGCTtgaagctgtttttttttttttcaattctaGAATGTTCTGCCctaagtgtgcacttgttcacttcccttcatgaaTGAGAGTCTGACATGCTTATACCAATCCAACGTTTTTAATTGTGTGATGCGGACGAGTGTACACTACCAGGATAATTGTGATGCAGAGAGTAGACTACATGACTGCACTTCATTGATTTCCTGTTTACCAGTGGCCTACTCCACCTGCTTACAGAGCAACACTAACCTAACCAATCCACCAATCCCCTTGCCTCTTACTGCTGATGCAGTATTTGTTTTTAAGCAATTAAGTTTGGCGTCGCCTATATTTCTCCTATTGCTTTTTGTTACTGACAGAACCTTTGCTAGTGCTaaactagcctgggtaccagtctgtttctgcccTCTTGCCTACTCCTTATGGATTTGTCATGCCTGGTCTGGCTTTACTATGACAGCAATGGTGTTGGCAAGAGCACTAACAGATCAGGGACCAGGCTATGCCTACACTCATTAACCTGTGAAATGGAAAGGGTTCATATTGAAACAAAAATGATTGAATTCTTTGAATTGCTTAAGAAAATAATGAGAATGCACTATGAAGGTGGTAGATACTTAGCAATCATTTCCAAGCCCAGAGGGAGCTGTGTTTATAAAGAAATATGAAATGTTTTTTGCTAATTGAATGTATTTCTAATGGATTACAACTGTGTGAAATACTTCTTTACCTAGTTCTTTTTCTTACGGAGCGtctacattaaaaaaaatgcaaTAATGACATTAAATAAATCCTACTTTCCCAAAATA

Function

GO: NA

KEGG:

id description
K17920 SNX5_6_32; sorting nexin-5/6/32

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2141030 lncRNA downstream 367 44757869 ~ 44758168 (-) True G1871503
TU2141028 lncRNA downstream 3927 44754372 ~ 44754608 (-) True G1871501
TU2141024 lncRNA downstream 5560 44752723 ~ 44752975 (-) True G1871497
TU2141016 lncRNA downstream 15639 44742681 ~ 44742896 (-) True G1871490
TU2140997 lncRNA downstream 103227 44655071 ~ 44655308 (-) True G1871471
TU2141035 lncRNA upstream 2319 44775637 ~ 44775998 (-) True G1871508
TU2141058 lncRNA upstream 52871 44826189 ~ 44830066 (-) True G1871531
TU2141153 lncRNA upstream 136774 44910092 ~ 44910369 (-) True G1871600
TU2141170 lncRNA upstream 166671 44939989 ~ 44940209 (-) True G1871617
TU2141172 lncRNA upstream 167748 44941066 ~ 44941385 (-) True G1871619
XM_036960535.1 mRNA downstream 21982 44698892 ~ 44736553 (-) True LOC110502822
XR_005039208.1 mRNA downstream 21983 44694075 ~ 44736552 (-) False LOC110502822
XM_036960530.1 mRNA downstream 21984 44694075 ~ 44736551 (-) False LOC110502822
XM_036960528.1 mRNA downstream 21985 44694075 ~ 44736550 (-) False LOC110502822
XM_021581147.2 mRNA upstream 4586 44777904 ~ 44789403 (-) False si:dkey-76k16.6
XM_036960537.1 mRNA upstream 4587 44777905 ~ 44789402 (-) False si:dkey-76k16.6
XM_021581146.2 mRNA upstream 4595 44777913 ~ 44789163 (-) True si:dkey-76k16.6
NM_001124704.2 mRNA upstream 25469 44798787 ~ 44801437 (-) True LOC100136752
XM_021581148.2 mRNA upstream 32998 44806316 ~ 44810368 (-) False LOC110502826
TU2138185 other downstream 1257102 43486868 ~ 43501433 (-) True G1868940
TU2137175 other downstream 1780391 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 4573323 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 4573323 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 5305120 39449397 ~ 39453415 (-) True G1864033
TU2141784 other upstream 1254602 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 2023917 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 2167968 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 2187304 46960622 ~ 46961653 (-) True G1873043
TU2142821 other upstream 2294590 47067908 ~ 47079790 (-) False LOC110502870

Expression Profile