RNA id: TCONS_00051962


Basic Information

Item Value
RNA id TCONS_00051962
length 7619
RNA type mRNA
GC content 0.53
exon number 44
gene id XLOC_026679
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40978997 ~ 41292569 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTGATGTGGCCCCCTACTTCAAAACAGAGCCGGGACCTCCAGAGATCCACCTGGAAGGGAATCGTCTGGTCATGACCTGCCTTGCGGAGGGCAGCTGGCCTCTGGAGTTCAAATGGATGCTCAACAACACTGATATCACAGCCTTCTCCCCTGAGTACAAGTACACCATTTCCTCTCTCCAGCGCTCCAATATGGGTGTTTATCAGTGTGTGGTGAGAAACAGGATGGGCGCTCTGCTTCAGAAAAAAGCCGAGATACAAGTGGCATATATGGGCGACTTTATCGACAACGACCAAAGAAAGACGGTAACTCAGGGCCGGGCCGCCATCCTCAACTCCCCAGCGGTCAGTTGTTTTCCGCGGCCGCAGGTGACATGGTTCAGAGATGGCTACAAGATCATTCCCAGCAACAGAATAGCCATAACGTTGGAGAACCAGCTAGTGGTGCTGGGCACAGCCGCGTCAGACGCCGGGAGGTACTACGTCCAGGCCGTTAATGAGAAGAATGGAGAAAACAAGACAAGCCCATCTATTTACCTGAATGTGGCAGATTCAGAGGCCCCGGCGGACCCCGTGGCTCCAGTGATTGTAATCCCACCCCGAAACACGACCGTTGTGGCCGGGATCAGCGAGGCCACGCTGGAGTGTGTAGCTAATGCACGTCCGGTTGAGAAGCTGAGTTTGGTGTGGAGGAGAAACGGTGTGGAAGTGGCGAGCGGCGTGGGCTCCTTTAGCCGACGACTGACCATCATCAACCCAACGAGTACAGACGTGGGCATGTACGTGTGCGAGGCCTTGCTCTTGGACAGCAGCGTAAAACCAGCAGAGGCCAGAGCATTCCTCTCCATCACAGAGGCGCCCTATTTCACCGCCGAGCCCAGGAGGAAGATGATGGGAGAGGTGGAGAAGAGCGTGGATATCCAGTGCCAAGCTCGAGGAGTGCCCATGCCCAAGCTGGAGTGGTATAAAGATGCTGTGCCCCTCAGTAAGCTCAACAACCCCCGCTACAAGATCATCTCCAGCATGGGCCTTCAGGTCAGAAAGCTCCAGCCCAGCGATGCCGGAATCTTCCAGTGCTTCGCTAGAAACTCAGCCGGAGAGGCTCAGGTCCACACCTACCTAGATGTCACCAGCATGGCTCCAGCCTTCACCGCGCCGCCGCTCGACATTACTGTCACAGACGGAGCAGTGGCCGCATTCACCTGTCGCGTTTCTGGAGCCCCCAAACCTGCCATCGTCTGGAGGAGAGATACTCAGATCCTGGCCAGCGGTTCAGTGCAGATTCCACGTTTCACCCTGCTGGAGTCTGGCGGTCTGCAGATTCAACCGGTGGTGCTGCAGGACACGGGGAATTACACCTGCTACGCCGCTAACTCAGAAGGAGCGATCAATGCCAGTGCCTCCCTCACTGTCTGGAGTCGCACATCCATATCCAGCCCACCCACGGACAGACGTGTCATCAAAGGGACCACGGCCATTTTGGAGTGCGGCGCAACTCACGATCCGCGTGTAGGGGTGAGGTACGTGTGGAAAAAGGATGAGGAGTTAGTGAGCCACTCCAGAGGGGGGCGTATCAGCCTGCAGGAGGGCTCCCTGCACATCAGTCAAACCTGGTCCGGGGACATCGGCAACTATACCTGTGATGTCATCTCTGAGGCCGGCAACGAATCCAAGGAGGCTCGTCTGGAGGTCATAGAGCTGCCACACTCGCCTCGAAACCTACAGGCCAGCTTGAACGCCAACGACAGCCGTAGTGTGGACCTGTCCTGGATGAGACCCTTTGATGGAAACAGCCCACTGCTGCATTATGTGGTTGAGCTCTCAGAGAACAATTCTCCGTGGAGAGTGTATTTGTCTGACGTGGACCCCTCTGGGACGGGAGCGATGGTGAAGGGCCTCACACCTGCCCGGTCATACCAGTTCAGGGTCTGTGCTGTCAATCAGGTGGGCAGGGGCCAGTACAGCACCGAAACCAACAGACTGATGCTGAGAGAGGAACCGCCCAGCGCACCGCCCAAGAACATTGTAGCCAGCGGCAGAACCAACCAATCCATTATGGTGCAGTGGCAGCCGCCTCCAGAGCCACAGCTCAATGGAGTCTTGAGAGGCTACGTCCTCAGGTACCGGCTCGCGGGGCTCCCTGGAGAGTACCAGCAGAAGAACATCAGCAGCCCTGAGATCAACTACTGCCTGATCACAGAGCTCATCATCTGGACCCAGTATGAGATTCAGGTGGCCGCATACACCGGGGCAGGCCTGGGCGTCTTCAGTCAGCCTGTCACTGAGTACACGCTGCAGGGAGTTCCTACAGCGCCCCCACAGGGAGTGGAGGCTAAAGCAGTGAACTCAACCACCATTGAATTTTCCTGGAATCCACCGCCTCAACAGTTCATCAATGGCATTAATCAAGGTTACAAGCTGATGGCATGGCCTGAACGCTCTCCAGAGGAGGTTATCGTGGTGACCATTACCCCTGATTACCATGGTACACGTCACCTCGGGTACATCAGTGGCCTGAGGAAGTTCAGCTGGTACTTGACGTCAGTGCTGTGCTTCACCACACCAGGGAACGGACCCCGCAGTCCCCCCAAACTAGTGCAGACTTTCGAGGACAttCCAGGGCCTGTCGGTCGCTTGAGCTTTACTGAGATTTTGGACACGTCTCTGAAAGTGAGCTGGGAGGAACCAGTGGATAAAAACGGCATTATTACTGGTTATCTGGTGTCATGGGAGGTTCAGGGGAACAACCAGTCGCGAGTGGCACGTAATTTAGCCAACACCACATTGGACTATAAGGTCACGGGTCTGACGTCTCTCACCACCTACACACTGGAAGTGGCCGCAATGACGGAGGCGGGAGTAGGAACTGTGACTTCATCCACTATTTCGTCTGGAGTGCCACCAGAGCTTCCCGGGCCTCCCTCCAATCTGGTTATTTCCAAGATCAGTTCACGATCTGCTACGCTCAAGTTCCGCGCAGGGGATGATGGGAAGACGGCCATCTCCAAGTGGATCGTTGAGGGGCAGGTTGGCAGTATCGGTGAAGATGAAGAGTGGAAGGTGTTATATGAAAAAGAGAACGACCCTGAAGCTCAGATGCTGGAGGTTCCCAATCTCACCCCCTTCACACACTACAGGTTTCGAATGCGTCAGGTGAATATCGTGGGTCCGAGTGCAGTAAGTGTACCATCCCGAGTCATTCAGACCCTGCAGGCTCCTCCAGATGTGGCCCCCAGCAGTGTGACTGTGCGGACTGCCAGCGAGACCAGCCTGTGGCTACGCTGGGTGCCTCTGCCAGAGAGTGAGTACAATGGGAACCCAGAGAGCGTGGGCTACAGGGTGAGGGTGATGCGGGCAGACCTGCGGGGTGAGGCCAGCACAAGACTGCTGAACGACAGGCTAGAGAGGGAGATCACACTCGAGGGCCTGGAGGAGTGGACAGAGTACCAGCTGCAGATCCAGGCCTTCAACTCCATAGGCCCCGGACCCTGGAGTGAAAGTGTCAAGGGACGCACACGGGAGTCAGTGCCATCAGGGGCTCCGGAAAATGTGACGGCAGAGGCCATGAGCTCCAGTCGCATCCTGGTGACCTGGGGTCCTGTTCCCGAACACGAGCAGAACGGCAACATCCTTGGATACAAGGTTCTGTTCAAAGAGAAAGACTCTGATTCAGAGGCACAGGTGAACGTGGTGAAAGGGAATCTGACACAGTCTGTCTTGCTGAGGAACTTGCGGAAATACGTCCAGTACGAAATACAAGTTTTGGCTTTCACACGAATTGGTGATGGGCAACTCAGCAACCCCCCGGTGCTGGAGAGAACCAAGGATGACGTTCCTGGACCACCCATGAGACTTGTGTTCCCAGAGGTACGCCTGACAGAGGTGAGGGTGGTCTGGCAGCCGCCTGTGGACCCCAACGGCATCATAATGGGATACCAGGTGGCTTACCGTCTGGATTCTGGAGATCCCAACCAGTTCATCACAATAGAGGTGGGCCCTGATACCCGTCAGTTCACCGCCTCCAGCCTGACCCCAGAGTCGGCCTACATCTTCCGCATCTCCGCCAAGACTGAGCAGGGCTGGGGATCGCCTGCACAGGCTGTGGTCATAACTACTGAGATCAGAGAGCGCCCACAGCCTCCGCGCCAGCTCCGAGTGCCACAGGACCATGTACAGTCACGCAAACTACTACTCAACTGGGTCCCAGGAGGCGACGGCTCGTCTCCTGTCCGCTACTTTACACTACAGACACAAGAGCTGCCCAGTGGAGAATGGATCACCCATTCCTCTGCCATAAGCCACAATTATAGCTCCTGGGAGGTGGACAGGCTGAAACCCTTCACTTCATACAAGCTGAGAATGATGGCGACTAATGACGTCGGAGACAGCAAGTACAGCCAAGAGACGGATGCAATTACCACTTTACAAGATGTTCCTGATGAAGCGCCCATGATTCAATCCGTGAAGCCATCCACGACGACATCTGTGCTGGTGCAGTGGCAGACGCCCAAGGAGGAGAGTGTGAATGGGGTTCTGGTGGGCTATCGGCTCTACTACCGCGAGCTGCAGTATGACAGCACTCCGCAGGACTCAAAGCGGCCCGTCAACAGCTCCCAGCTGCGCACCGAACTGACAGCCAAAAGCACTGTGAAGACTGTCAGCAATCCTTCATTAACCGAATTCGAGCTAACACAGCTGCAGAAATACAGGCGCTATGAAATTGTGATGACCGCCTACAATGTCATTGGTGAAAgccctccaagtgctccggtggAGGTGTTTGTTGGCGAAGCAGCCCCCTCTGTGGCCCCGCAGAACATCCAGATCAACACTTTGTCATCCACTCAGCTGGAGGTGCAGTGGGAGCCTCCACCCGCTGAGACCCAAAATGGCATCATTCAGGGATATAAGATCCTATACTGGGAGATGGACAGTCAGAATGAGACAGAGAGAGTGAAGATCCTCTTCCGACCGGAAACCAACATGAGGCTGAAGAACTTGACCAGCTACACATACTACATGGTCAAACTGTTGGCCTTCAATGCCGCAGGAGATGGGCCGTTCAGCGAGCCCAGGAGGGGACGCACTCTTCAGGCAGCACCCAGCGCCCCCAGCTTCATCAGTTTCTCTGAGGTGACCAGCAGCACTCTGAACGTGTCCTGGGGTTTCCCACTGTCTCCCAACGGTGTGGTGGAAGGGTACAGGGTGGTGTATGAACCCACTGCCCCTATTCAAGGTGTGACTAAAGTGGTAACGGTGGATATTCGTGGCAGCTGGCAGCGTTGGCTGAAGGTGCGTGACCTGACCAAAGGCATGACCTATTGCTTCCGCGTGCAGGCCAAGACTATTGCCTACGGGCCTGAGGCAGAGGCCAATATCACAGCGGGTCCTGTCAAAGGATCTCCCGGATCACCTGTAGAAATGTCAATCACAAAGACAGGATCTATGCTCAACATCCAGTGGACAGCAGGGGAAACAGGAGCAGGACATGTGACGGGTTATGTGATTGAAGCACGTCCCTCAGACGAGGGGTTGTGGGATACGTTTGTGCGACACCTGCCTCCCACCAGCACCTCTCACTCTGTGAGTCTCGACCGTCTGCGGCAGGGAATCAGCTATCAGTTCAGGGTGCTGGCCGTCAATGAGTTTGGCTACGGTGAGCCGAGTGCGCCCTCTGCTGCCATGTCAGCTCAAGTAGACACCCCATTTTATGAGGAGTGGTGGTTTCTCATCGTGCTGGCACTGTGTGGCCTGAttctgctgctgctggtggttTTTGGCCTTGTCCTGCACGGACAGAACAGAAAGTACAAGAGCTGTGGAACAGGTAAAGCTGTGTCCACGGTGGAGGAGACGGTCACGCTGGACAATGGAGGATTCACGGCTCTGGAGCTCAACAGCAGGCCTGTTCATGTGAAGGGCGTCTTCTTGAGGAAGAATGGCACAAGATCTCCTCCACGCCCCAATCCAGCCGGCCTGCGCTATTCAGACGAAGACATCTGTAGCAATTACAATGGCGTGGTTTCCACTGAGAGTACCGCGCTGACGGAGAGGCCTGCAGAGATGTCTGAGTCTGAGGCCACAGACAGCGAGTGTGAAGAGGAGCCCATCAAACACTCGTTCGTGAATCACTACATGAGCGACCCGTCGTACTTCAACTCGTGGAAGCGGCAGCAGAAGGGGCTGAAGCAGACGCTGGCCTGCTCTTACGAGGAGTGTGCCAGCGGGGACAACGAGTCCTACTATCAGACAGTAGTGACGCAGCACAGTGTTGGTGGGGTCTACACCCCTGCCGGCCAGCCTGCGCCAGGCTCACGGACTCCCGTCACAGGCTTCTCCTCATTTGTGTGACACACAGAACCACCTGCACCCCTCTTTGTGGCTCGGACAACATAGTTGCAGAGGATCTCCTCTGATTTGGCACAGCACTATCATCACGAGCACTATAAGAGAGACATCACGTGTGAACGAACGCTCATCGAGTTGCTGGATTCTGAATGTACTCGATTAGCGATCATTATtcagaggagaaaaacaacaagaaaaaaagatttttatacgCCAATACCGAAGAGTTACTGTTACTGTACCGTGTCCCTCCTCATGTTTGCAGCCTTGGTTGTGAAAGATGCATAAATGTCTGTGGTTTTTAATAAGCAGGACTCACCGGTCGATGTGATGAGACACATGTATACGCGTAACATTCCTGCCCCGTCACATTGAGATGAACATGAGGAAAAGGCGAAGTGGAAAAACACACTGTAATTACTGTATACTCTTGTCTGAAAAATTTCATCTCACCGTCAGTGTCCCTATATATACACGTTGCACTTGAGGTCGCAAAGGTCATGAAATGTAAATCTTCTCTAATGGATTTGATTCATGCAACCTGGATAATGAAGCACGGATGTTTTCAGTAAATTCTTTTATAGACTCACCagcaaaaaaaaactaacctaCGGAGGTCATTAGAAATGGTCTGGTTTTCTGCCTCTGTGATTGGACGGTGAGACAGTGCCAGATGTGTTGTGATTTGTGCCATtgctcattctcacacacatatcaacatttgtttttttttttcttctggcttTTTCTTTTGTTCCTGTCTGTTCGGCCTCGCTTAGGAACTGCAAACACTCACTTGAAATTATTTAATGATCGAATGTATGACTTGTGTGTGAGGAGATCAGTATGCAGTTGCTTTGCACATACGTTCTGCACTCTTGAGCCATAAATATTTGAGTTTCCTCCTTCAGTATGATTGACtctttgcttttatttgatttttttgacAGGCTTGTAAAAAGTGTAATTTCACAGTGCGATTTTAAAGTTAATTTGTTTTGTCGTTCGCTATAGTGTTCTTCAGAAGTGACGTACAGTAGTTCCGTTGTACTTTCATGAGAAGTTTGAATTTTTGCAGTTCTTGAAAATGCCAACACAACAAATACAGTTATCAAACAAGAGTGTACTGTTATGGAAATGTTTGTTTCAGTCTCACCAAGTGTTTTAGCACAAGTGTATGTCATGGACGTTCATGAAGTAAAGATTTTTTATGATAAATGAAATGCTTGTTGTTGACTTTAATGCCTCTAAGATACAAAGATGTTTTCTT

Function

GO:

id name namespace
GO:0007416 synapse assembly biological_process
GO:0010842 retina layer formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-374 Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK1 (sidekick cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDART00000144088

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051957 lncRNA downstream 16165 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00053084 lncRNA downstream 201274 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051941 lncRNA downstream 449221 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051940 lncRNA downstream 449222 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051965 lncRNA upstream 103848 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA upstream 152919 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051968 lncRNA upstream 239007 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051975 lncRNA upstream 712945 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00053085 lncRNA upstream 891078 42183353 ~ 42189025 (-) False XLOC_026687
TCONS_00051958 mRNA downstream 2415 40969242 ~ 40976582 (-) False XLOC_026678
TCONS_00051961 mRNA downstream 2534 40975202 ~ 40976463 (-) True XLOC_026678
TCONS_00051959 mRNA downstream 2709 40969322 ~ 40976288 (-) False XLOC_026678
TCONS_00051960 mRNA downstream 5206 40970110 ~ 40973791 (-) False XLOC_026678
TCONS_00051955 mRNA downstream 13401 40958870 ~ 40965596 (-) False XLOC_026677
TCONS_00051967 mRNA upstream 239004 41531279 ~ 41535761 (-) False XLOC_026682
TCONS_00051969 mRNA upstream 337330 41629605 ~ 41715690 (-) True XLOC_026683
TCONS_00051970 mRNA upstream 492267 41784542 ~ 41795917 (-) False XLOC_026684
TCONS_00051971 mRNA upstream 493586 41785861 ~ 41791178 (-) True XLOC_026684
TCONS_00051972 mRNA upstream 663083 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051939 other downstream 449218 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 449219 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 820310 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 890196 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 1021523 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051964 other upstream 19747 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 1573808 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 2789348 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 5902862 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 7785487 49077762 ~ 49077879 (-) True XLOC_026748

Expression Profile

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