RNA id: TCONS_00051968


Basic Information

Item Value
RNA id TCONS_00051968
length 524
lncRNA type sense_over
GC content 0.43
exon number 3
gene id XLOC_026682
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 41531279 ~ 41535761 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAACTGCAGTGTCTCTGGGAGTCGATTCCTGTCTTCGAGTCAATTTCAGCACTTGAGGAATCGAGGAATCGACTCTTTGGAGTCGACTCCCTAATACATAAACAACGGCTTTCGATCTGCCTGTCAACAAAACTGCTCATGCGGCTACTTTCTCGCTGCTTTCGCcaatttcaggCAGCTGAAAGACAACGGGACGATAGACAAAGAAGAGCTGCAACAAGTTCTGCATTTGTGCATTACTCACAGAATTTGTCAATGCAGAAATGTGGCTTCCAATGGCCATCCTATCACGATGTATCACCTGCCACACCTTTTTGGAGCAAGAGATTACCTAAAGCCAGTTTCTCAGGAGGCTATAGAACCCTGTCAAGAGGAATATCTTCTGAGAGGGCCATACTCATGTGATGAGATCCACAAACAACACCTGATGAAGCTTGATGTTTTTGAGGAGCTGTATGGTTTCAATTCTGTAAGCAACAATTGTAACAACATACATCActtgaaatatatacattttattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051965 lncRNA downstream 19072 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA downstream 19072 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051957 lncRNA downstream 568450 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00053084 lncRNA downstream 753559 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051941 lncRNA downstream 1001506 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051975 lncRNA upstream 469459 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00053085 lncRNA upstream 647592 42183353 ~ 42189025 (-) False XLOC_026687
TCONS_00053086 lncRNA upstream 647592 42183353 ~ 42191283 (-) False XLOC_026687
TCONS_00053089 lncRNA upstream 647592 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00053090 lncRNA upstream 647592 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00051963 mRNA downstream 238713 40980264 ~ 41292569 (-) True XLOC_026679
TCONS_00051962 mRNA downstream 239007 40978997 ~ 41292275 (-) False XLOC_026679
TCONS_00051961 mRNA downstream 554819 40975202 ~ 40976463 (-) True XLOC_026678
TCONS_00051959 mRNA downstream 554994 40969322 ~ 40976288 (-) False XLOC_026678
TCONS_00051969 mRNA upstream 93844 41629605 ~ 41715690 (-) True XLOC_026683
TCONS_00051970 mRNA upstream 248781 41784542 ~ 41795917 (-) False XLOC_026684
TCONS_00051971 mRNA upstream 250100 41785861 ~ 41791178 (-) True XLOC_026684
TCONS_00051972 mRNA upstream 419597 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051973 mRNA upstream 432043 41967804 ~ 41995321 (-) False XLOC_026685
TCONS_00051964 other downstream 219139 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1001503 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1001504 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 1372595 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 1442481 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 1330322 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 2545862 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 5659376 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 7542001 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 8279436 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

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