RNA id: TCONS_00051970


Basic Information

Item Value
RNA id TCONS_00051970
length 2149
RNA type mRNA
GC content 0.32
exon number 5
gene id XLOC_026684
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 41784542 ~ 41795917 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCAAACCAGGACACTAAGATTTCAACAGCATAATCATCTGTCTACCTTGGTGACCTGCTCTTTTCCCTCTCACAAGATTCCATCTCAAAGACTATTTGGAGAAGCTCCTCAAGCTATGCAACCTGGTTAAGTGGAATGAAGATACTCATCCTTCCATTTTCTAAACTGGAAGCTGATCAATACACAACGCTGAAGACGAGATGACATTACGGTTTGAGGCTTCCTGTCCTGATGGCCTATGTCCAGGATGGAGTGTCATCCTAAAAGGAGAAACCCCACCTGAGGCCAGCAAGTTTGAGATCAATTTCCTGTGTGACCGCGATGACAGAGTAGCATTCCATTTCAACCCGCGCTTCACCGAGTCTGATATCatctgcaactcttacatggcCAACCGTTGGGGTCAGGAGGAGAGATGCAACCACTTCCCCCTCGGCGTAGAGGAGCCTTTCCAGATTGAGATTTACTCCGACAACGACCACTTCCACGTTTACATCGACAAAGCCAAAGTGATGCAGTATAAGCACCGTGTGGAAGACCTGAAGACCATCACTAAACTGCAAGTGGTGAATGACGTCAAGATCTCCTCTCTGGAGATCActaaaaaacttttttactgAGTCTGGGCGGTGCATTCAATTGGAGCTCGCTTTATGTTTGTTGACAGTGCATCAATGTATTTTCGCATTCCTGTTGAAAACCTTTTATTGGTCAAGAGGATCTTCTTGGGTTGATCTGCTAGTAAAGGTGTGATTATCTGTATTGGCATGCCGTATAACTGAACTCTATATTCATTTGAATCTCTGAATAAATGAGAGGTCAATGACAGACTCGTTTTTGATTTGATGAGTGTGTTTGGTGACTCAgtatgtttaaaattaaatacaaataaataggcTTCCAGCTGACCTCCTGTTTTTTCAGAAAATCGATTCAAAATTATGCAGAGAAGTCAATTCTGAGGAAAATTATTCCAAGAAATCAATACTTATATGCTCATACAAATAGAGTGCTGAAGTTGTGGGGTCAAAAACTGGAAGACTATTGTTCCTGGTTAATTCAACATTTTTGGGgtacatttataattttctttattattattattattaatattatttgtatataaacaaataatgaacaatgatCTGTCACGGGAATTAGAGTCATGCTTTTTCACTAACAAAGTTCTTATTCTTATAAAGATCTTGTTctcgttttgtttgatttttactgTCTTATAGTTAATACAAACTAATTTTTCTAGTTTTcatgaattatttttaattacctGAACTTAATTTTTCACAAATCATTTTTAATTACCTCAACTTAATTTTACTAGTTTTcatgaattatttttaattaccttaacttaatttttctagttttcatgaattatttttaattacctcaacttaatttttctagtttTATGGCTAAATTTTTGTAGTTAGTGCAACATATTCTAGTTGCCCTAACAAATTTTTTTCTAGTGAAAACAGCTTAATTTTTCTAAATCCCGCAACGTAATTTTACTACTAacaacaacttaatttttaattaactttaaaaattaattattaattaattattttaatttttttttaattaacttatttttttttagctcttagatttttttttttttttttttagatctagTAACTTAGTATTGATAGTTGCCTTGATTACATTTTTCTGGTTATAGCAACTAATTTTTCTAAtttttctaattacatttttctgGTTATAGCAACTAATTTTTCTAATTTTTCTTCTGGTAAATTTTTTTTCTAGTTAGACAAACTTaatttgcttaattaccctaacttattTTTTCTAGTTAGTGCAacaacatttttgcagtttttgtactTTAATCTTATCACTGTTTTACTCTTTAGCCtgaatttaaaatgataattcgCCCACAAAtttacactcaagtggttctaaatgcTTATGAATTTATCTTTTAAAAGCCTctactgactttcatagtaagaaaacaaaaacaaacaaaaaaacatgaaagtcaattgctttttttttttttttttttttcaacaatccAACGTATATGTACCTTTGTGTTGCACAGAAGAAACTCAATCAggtgtgaattttcatttttgtgtgaacaacTG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0030395 lactose binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-163 Enables lactose binding activity. Acts upstream of or within camera-type eye development. Predicted to be active in cytoplasm. Is expressed in brain; eye; pleuroperitoneal region; and solid lens vesicle. Orthologous to human GRIFIN (galectin-related inter-fiber protein).

Ensembl:

ensembl_id ENSDART00000182662

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051968 lncRNA downstream 248781 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051965 lncRNA downstream 272332 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA downstream 272332 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051957 lncRNA downstream 821710 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00053084 lncRNA downstream 1006819 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051975 lncRNA upstream 209303 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00053085 lncRNA upstream 387436 42183353 ~ 42189025 (-) False XLOC_026687
TCONS_00053086 lncRNA upstream 387436 42183353 ~ 42191283 (-) False XLOC_026687
TCONS_00053089 lncRNA upstream 387436 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00053090 lncRNA upstream 387436 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00051969 mRNA downstream 68852 41629605 ~ 41715690 (-) True XLOC_026683
TCONS_00051967 mRNA downstream 248781 41531279 ~ 41535761 (-) False XLOC_026682
TCONS_00051963 mRNA downstream 491973 40980264 ~ 41292569 (-) True XLOC_026679
TCONS_00051962 mRNA downstream 492267 40978997 ~ 41292275 (-) False XLOC_026679
TCONS_00051961 mRNA downstream 808079 40975202 ~ 40976463 (-) True XLOC_026678
TCONS_00051972 mRNA upstream 159441 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051973 mRNA upstream 171887 41967804 ~ 41995321 (-) False XLOC_026685
TCONS_00051974 mRNA upstream 182950 41978867 ~ 42016693 (-) False XLOC_026685
TCONS_00051976 mRNA upstream 236443 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051977 mRNA upstream 325249 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051964 other downstream 472399 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1254763 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1254764 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 1625855 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 1695741 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 1070166 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 2285706 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 5399220 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 7281845 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 8019280 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

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