RNA id: TCONS_00051973


Basic Information

Item Value
RNA id TCONS_00051973
length 621
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_026685
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 41955358 ~ 42086648 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGGACGACGTGTCTGAACTACTGCGTTCTGCAGTCAGAGAATACCCCAAAACAAAGggtaACCTTGAGCAAATTCAAAGAGGCTTAAACACCACTGAAGCTGGACTACATCAGCTCACTGCCCTAGTGGATTGCCGCAGTTTGCACATgGATTATGTGCAGGCACTGACTGGCGTGTGTTACGACGGACTGGAGGGTCTGATCTACTTGGTGCTCTTCTCCTTCATCACAGCTCTCATGTTCACCTCGGTCATCTGCAGTGTGCCGCACACATGGCACGGCAAAAGgcctGAAGAGGACAGTGAGGAGGAGTCGGTGGCTCCTGGAGGCCGTCAGAATCATGATAACCTGTACCGTGTGCACATGCCCAGTCTGTACAGCTGTGGCAGCAGTTACGGCAGTGAGACCAGCATCCCTGCAGGAGCTCACACTGTCAGCAATGCTCCTGTCACTGAGTACATGACCCAGAATGCAAATTTCCAGAACCCTCGCTGTGAAAACACTCCTCTGATCGGCAGAGAATCTCCTCCACCATCTTTGTATTTGACCTCCACGGACAGTAACAGCCGCCACAGCTGGCAGTTAAAGCCATCGGAGAGTTCCCGCTCATTTTGGTAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0034707 chloride channel complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005229 intracellular calcium activated chloride channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0072320 volume-sensitive chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120508-1 Predicted to enable intracellular calcium activated chloride channel activity and volume-sensitive chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in plasma membrane. Orthologous to human TTYH3 (tweety family member 3).

Ensembl:

ensembl_id ENSDART00000192277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051968 lncRNA downstream 432043 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051965 lncRNA downstream 455594 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA downstream 455594 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051957 lncRNA downstream 1004972 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00053084 lncRNA downstream 1190081 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051975 lncRNA upstream 9899 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00053085 lncRNA upstream 188032 42183353 ~ 42189025 (-) False XLOC_026687
TCONS_00053086 lncRNA upstream 188032 42183353 ~ 42191283 (-) False XLOC_026687
TCONS_00053089 lncRNA upstream 188032 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00053090 lncRNA upstream 188032 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00051970 mRNA downstream 171887 41784542 ~ 41795917 (-) False XLOC_026684
TCONS_00051971 mRNA downstream 176626 41785861 ~ 41791178 (-) True XLOC_026684
TCONS_00051969 mRNA downstream 252114 41629605 ~ 41715690 (-) True XLOC_026683
TCONS_00051967 mRNA downstream 432043 41531279 ~ 41535761 (-) False XLOC_026682
TCONS_00051963 mRNA downstream 675235 40980264 ~ 41292569 (-) True XLOC_026679
TCONS_00051976 mRNA upstream 37039 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051977 mRNA upstream 125845 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051982 mRNA upstream 922822 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051983 mRNA upstream 968724 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051984 mRNA upstream 969395 42964716 ~ 42967698 (-) True XLOC_026693
TCONS_00051964 other downstream 655661 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1438025 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1438026 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 1809117 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 1879003 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 870762 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 2086302 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 5199816 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 7082441 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 7819876 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

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