RNA id: XM_021581231.2


Basic Information

Item Value
RNA id XM_021581231.2
length 4605
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110502884
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 47450667 ~ 47458009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGCAGCCACCTAACTAGCATTGGCTAATCCGTGTTGTTGGCTAATGCTACTAGCATGTTGTTTAGCTAGCCTTGCAAAATTGCTACAAATTGGCAACAATGATACGACCACATATTCACTATTTACATATCTTAGATGCATGTCGGGTATTGTTCTCGATATGTGTGGTGTTTTGTATATCATTGTATAGGTTCTAATTTTTAAAGGTTTAAAggagctatttaaaaaaaatagatggCGACCTGCGCAGTTGCGATGGCGTGTGTTTACTATCGCATTGAGCTACCTCGACAGCTCCCTTCCAGTTTAAGGAAATGGGTGGATTTTTATTGAGAATTAAATGTTTACATAGGCACATCTTAAATGTGAATCTGTTAATAATGAAAGTTATCTTATGAAACATTCATATAATTTGAAAGATAAATATAGCTTTGTGTTTCTGCTTCTCGGCTAATTGGATTACACATTACAACTAACGTCAGAACTGTATTGTGTTATAACACTATTAGGCACAAAATACTGCTTTAAATGCAGAATTTACGGGTATCGTTCCATATTTAGTGAGGTTTAGCCCGTTAGAAACTAGCGGTGGGCAGCTTATTGCTGAATCACTATGACTTTATGAAATGGTCACATCGGTTTACAACGACGCCTCGTGGTAGGACAGACGTTTTTGAGTGTAAGGTCACTTCCCACGCATTTCGGGAAACAGTAAGGTCAAAGATCCACCGTAAACTCACCAGAGCCTTTATTTAGAACAATAATTATAATCCAGTCTAGACGTCTATGTTAGAGCTGAGTCATTCTATTTGACATCTATCAAGTTCTTATTGTGATCTCGTTCCTTATCCTAATTAGGGGAAGGGGATTTTATTGTTAATGATTGTAACAACACATGATAACCTACATCAAACGCAATAATAACTTCTAAAATAACACTCAAAACATAGCTGCCACTTGTCCTGAATagatcaaatattaaaatgtaaaaGATATCCTCCAAATACCAAGTTTCACATGCAAGAGTCCAATCcagccagtggaggctcctcagaggaggaagggcagGACCATCATCCTCAGTGAAAATAAATGGAAACATTCGTTAAaccttttagataaaactatactaaaatattcatactaaatatattaatgtcaccaaataattgattaaaacacactgttttgcattgAAGGTCTACAGTTGCCTCAGCAGCAccagggtagcaccatggtgtagacgGAATACAGTTATATTCCTtcgtcctctgggtacattgacttcaacacAACCTagaaggctcatggttctcacccccttccatagacctacacagtaattatgacaacttccaaaCCGATCAGAGCTCCTGCAGCATGAACTagcatgttgtccacccaatcaaaaaatcagagaatgaatctagtactgaaagctacagctagctagcactgcagtgcacaaAATGCGGTGAGTAGTTGACTGAAAGAGAGACCAATagttgaacaaattcatttcttccaAATTAAGAAGTGAGaggttgtatttttttaaattgtaactTTTACTTAGCAAGCGAATGCAGCTCGCTAgttttagcctactcaaacacccagctcaaaaagagagggatgctatgttagcagGCTGGTTATCAaatactggaactcttccaagtccaGGTAAGCGTTTGGTTTTattttattgccaccggggcctgccggtgtaactgctgaACTGCTTTCTGactgcactgtactgcatgattaaAGAAGGTTTACTTACGCGtcagttctagtagctatgttgacaatGGCGTGACAACGATGTatgctgtgtgtagcggttagcggtcatggtatgaaggtttggcttggaaaggtttttgtGCCTGGCTATAGACAGCTGATGTAcaatgaagtccacaagcgaagggaaaaggtgagaagaGGCGAGCACGTAGATAGTTGcaagactacaaagggaaaccagcCGCATCGCGGACACTGACATCTTGCTTctggacaaactaaacaccttcttcacccaTTTTGAGGAGAACATTGTGGCACCGACACGGctcgctaccaaggactgtggggtCTCCTATTTCCGTGGccacgtgagtaagacattttcgCGTGTTATGCCTCACAAGGCtgtcggcccagacggcatccataGCCGTGTCCtcggagcatgcgcagaccagcttgctggagtgtttatggacatattcaacctATCCCAGGCTGCTGTCCCCACATCAAGATGTCCACCTTTGTTCCTGTACCTAAGAaaacaaagACCGTCTATAAATCTGTGTTTATTGGTGTCGGAGACACAGGATAAAGCCAGATCATGACGTCAGAAAGAAGCAGCAAAGCCCTGAAGgTAAAGCGGGAGTGTGGAGAGAACGTTCCGGTGTTGTCGGACAGCGAGCTCATGTCCCTGTCTGTACGGGAGCTCAACTTGCACCTGCGGGGTTTGTCCCGCGAGGAGGTCCAGAAGCTCAAGCAGCGCCGGCGCACTCTGAAGAACCGTGGCTATGCTGCCAGCTGCCGGGTGAAGCGCGTGTCCCAGCGCGAGGCCCTGGAGCAGCAAAAGAAGGAGCtccagagggaggtggagaggctgGGTGTGGAGAACGCAGGGATGAGGAGAGAGCTGGAGGGCCTAGGGGCCAGGCTGGCAGCCCTGCAGAGATTTGCCCGTGGGTTAGAGTCTGGAGGGGGCAACCTCCTGGCTACAGCCCCACGCCTCAACACAGCCTCTGTCATTACCATAGTGAAGACCCCGCCACAGGCCCACGTCCAGAGAGAGCAGGGGGGTTCCTAGGAGGAACCGACCGGGCTGGAGACAGACAAACGCTTGTACATGTACACTCATATACACAGGCACGTACATAcactctcatatatatatatatatatatatatcacacacagcTAAACACATGCACGCTTGGAGAGAGCAGGAGGATTGGAGGAATAGGACAAATAGGCACTTATGAAGCTCATGCGCTTCgggtgacacagacacacacacacacacacacacagacgtacgGTGTTCACAGGCAGTGACAAATAGTCTCTAAACCCAGCCAACACACACTCAGACATGCGTGGACTTAAGGAAACACGATGGTTGACGAATCCAACTAAAGTACGACAGACGTGCAAAACAGGGACACAGACACCATCCGTGGACAAAGCCAGTCTTGCTGCTGGTGCTCTCTGTAACTGCTACTCAACAGGCCCGAGCCAGCTAACACTCTGCCTTCTGGCATGGCATCCAGCCCTGATACACAATGTCTGGGTTAATCAGACTCTTCCACCGCTTCTTCTAATGCTTTGACTTTTTAAATGGCATCACTATTGACATCTGTACACGTCTTGGAGTGTTGTTCCTCTGTACTTCTAGTGTGTCGATACTATTGTGCTTCACTGTGCTGCCGTGTGTAGTGGTTACATGGGTGTTTTCAACTGTACCACAGTGCACATTTTGGTTtgctattaaaaaaaaaacatcctttGCTTGTCTCTAGATTCCCCAACTTGCAGAAGTTGGTCATTGCTGGAAACAGTTGAATAATCAACATCTCGTAGAATGCTATGTCAATGCAAAAATCAATTGATGCATTCctttatctgttattttataATGTTTATACAAGAGACAAATGTTTGAGCAAACGTTTATTCAGAGGTATTCTATTTTATGTGTATTTAAAGGATAGATATTACAAAGCTAATGAGTGCTGTGATGTAATGTATGTTTCAAATACCTGGATATGACTAGTTTGGGGAAATTCTCAAGTCTACTTGTTGTATGGAGTGTGACAATTATTTTTGTAATGTTTAACTTGTAATGAGCTGTTTTAGATATGCTAAAAGCCAACGGTCATGTTGCTGTAAGATGATTTTAGTATGTGTGTACACCATATTTGTACTAATTTCATAGTGAGTCGTGTGGCTTGTTGTAGGGATACTATTTTTCTATAAAGTACCAAGGTGATTGCGATGATACGTATTGTTATTTATGATAATTATTATTTTACGTTTTGTTTTCTGAAATTGCTCGAAAGGGAGACAAACACTGTAAGGAGAAAGAATGAAGGAAAAGAATGGTAGAAGAAAAAGAGATGGATATGAAGAAAAGATGTGGTGGTAGAGAGGATTTGGGAGGTGATTGAGGAGGtcaaagagagaggacagagatgagTGGTGCTTAATTCACCTGAAAGCCTTGTAACATCCAGGATTTATCAATAAACCCCTGCTGACTCCACTAGACAGTTTGATTCGACATTCGGAAATTAATGGCAATATAAATTTAATCTGTCAATAATATGACTCATTATATTGTGTTGATTAATACTCCCTTAAGATATACTTAGCTATCTTCTCAATATCAATGTTGCATAGCATTTATCCTCTGTCTCATATAAGATTATTAATGTCAAATTGTGCTGGATGTTTTGTACAGCAAAACTAAAATGGTCTGTatttattacatgtattttttctaTGGTGAAAATTAAGTACATTGTCTATTTTATATATTAACTGAAATAAATGTTGTATATATTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2143126 lncRNA downstream 20896 47407475 ~ 47429771 (-) False G1873278
TU2143128 lncRNA downstream 20896 47422430 ~ 47429771 (-) False G1873278
TU2143127 lncRNA downstream 20896 47427027 ~ 47429771 (-) True G1873278
TU2143109 lncRNA downstream 21908 47401654 ~ 47428759 (-) True G1873268
TU2143112 lncRNA downstream 24657 47405123 ~ 47426010 (-) False G1873271
TU2143165 lncRNA upstream 11899 47469647 ~ 47526710 (-) True G1873305
TU2143230 lncRNA upstream 133297 47591045 ~ 47631660 (-) True G1873366
TU2143397 lncRNA upstream 304414 47762162 ~ 47762477 (-) True G1873520
TU2143422 lncRNA upstream 322914 47780662 ~ 47780955 (-) True G1873544
TU2143444 lncRNA upstream 341076 47798824 ~ 47799033 (-) True G1873566
XM_036960612.1 mRNA downstream 196232 47232147 ~ 47254435 (-) True LOC110502880
XM_036960611.1 mRNA downstream 197022 47232147 ~ 47253645 (-) False LOC110502880
trnar-ccu-55 mRNA downstream 260879 47189716 ~ 47189788 (-) True trnar-ccu-55
XM_021581222.2 mRNA downstream 263365 47175025 ~ 47187302 (-) True LOC110502875
XR_005039220.1 mRNA downstream 276469 47159805 ~ 47174198 (-) True LOC110502873
XM_036959909.1 mRNA upstream 343354 47801102 ~ 47889311 (-) False LOC110502890
XM_021581241.2 mRNA upstream 582840 48040588 ~ 48079485 (-) True LOC110502894
XM_036960655.1 mRNA upstream 699963 48157711 ~ 48169661 (-) False LOC110502896
XM_036960654.1 mRNA upstream 699963 48157711 ~ 48289997 (-) True LOC110502896
XM_036960657.1 mRNA upstream 903658 48361406 ~ 48372720 (-) True LOC110502897
TU2143011 other downstream 190734 47257593 ~ 47259933 (-) False G1873183
TU2142821 other downstream 370877 47067908 ~ 47079790 (-) False LOC110502870
TU2142808 other downstream 489014 46960622 ~ 46961653 (-) True G1873043
TU2142791 other downstream 508210 46941286 ~ 46942457 (-) True G1873030
TU2142235 other downstream 653017 46797235 ~ 46797650 (-) True G1872556
TU2144319 other upstream 1062931 48520679 ~ 48521672 (-) True LOC110502901
TU2144817 other upstream 1180243 48637991 ~ 48641871 (-) True LOC110503133
TU2144859 other upstream 1271864 48729612 ~ 48737282 (-) True LOC110502911
TU2145415 other upstream 1846771 49304519 ~ 49307135 (-) False G1875310
TU2146049 other upstream 2323864 49781612 ~ 49846328 (-) True LOC110503141

Expression Profile