RNA id: TCONS_00051977


Basic Information

Item Value
RNA id TCONS_00051977
length 1264
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_026686
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42121166 ~ 42125655 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAATCTGAATCCTCCACGTGACACTGAACAACACGCGGGAACAAGCGAGAGATTCATCAGTATACTTCGACTCAAATTCATAACATACACAAACATTCATTCTGTTTTTGTACAAGTTATTACGTTCTGTCTCCATAGGCTTCTTTGGACAAAGATTATGTTCACGTCTAAGCTGCTGACCCTGGTGCTGGTGGTCCAGCCCGGCCGGGTGTTGCTGGGCATGAAGAAAAGAGGCTTTGGAGCTGGAAAATGGAACGGCTTTGGAGGAAAAGTCCAGACTGGAGAGACCATAGAGCAAGCGGCCAGACGgGAGCTGCTGGAGGAAAGTGGCCTCACTGTCGACACCCTCCACAAGATTGGAAAcatcaaatttgagtttattggGGAAACCGAACTAATGGATGTTCACATTTTTAGAGCTGACAACTATGAAGGAGAGCCAGCCGAATCAGACGaGATGAGGCCGCAGTGGTTCGACATTGATAAAATCCCTTTCAGCCAGATGTGGGCCGATGACATCTTGTGGTTTCCTCTGATGCTTCAGAAAAAGAGGTTTTTGGGGTATTTTAAGTTCCAGGGTCATGATGTAATAGTGGAGCATAAACTGGACGAGGTGGAGGACCTTTGAGTGGggttttaaagagacagttcacttaaaaatgaacattgtttcatcatttactcaatatCAAGTAAGtccaaataaagttatttttattctgtagaattaaaaaaaaaagatattcagAACAATGTTGGagaccggtaaccattgacctccatggtAAGgagaaaaatactatagaagtcagcattcttcaaaatatcttcttttgtagtCAACAGAAGAAAGTTCAATGGAATACGTGTagggagagtaaattatgacaaaatgctaattttttggATGAACATTTGCTTTAATACCGTTTTTGATGGATGTTACCACTGTATCAGTGGAAATTATCCAGCAAGATCTGATGTTCACACTACTGAGTATGTTTCATGGATATGGCCAAATATGTAATATGGCCAATATTTGCCTGATATCCAGTGCTGTATTTTGTATTAGCACATTCTTTTGATGTGAGAAGTTTCCATTGAAATCCACACATTCAAGAATCTGTATTCTGATACGGTTTGGTTTTACTTAATTCTTTGTCTTTTCTACAATTAGTAGTGtactaaataacaaaaaaagaaattgcaTCGTCAACTACATGtcatttactaaataaaacatCAGAAAATCCAGACAAAAA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2757 Enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to act upstream of or within DNA repair. Orthologous to human NUDT1 (nudix hydrolase 1).

Ensembl:

ensembl_id ENSDART00000040753

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051975 lncRNA downstream 88690 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00051968 lncRNA downstream 585405 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051965 lncRNA downstream 608956 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA downstream 608956 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051957 lncRNA downstream 1158334 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00053085 lncRNA upstream 57698 42183353 ~ 42189025 (-) False XLOC_026687
TCONS_00053086 lncRNA upstream 57698 42183353 ~ 42191283 (-) False XLOC_026687
TCONS_00053089 lncRNA upstream 57698 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00053090 lncRNA upstream 57698 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00053088 lncRNA upstream 57698 42183353 ~ 42200050 (-) False XLOC_026687
TCONS_00051976 mRNA downstream 34518 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051972 mRNA downstream 34589 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051974 mRNA downstream 104473 41978867 ~ 42016693 (-) False XLOC_026685
TCONS_00051973 mRNA downstream 125845 41967804 ~ 41995321 (-) False XLOC_026685
TCONS_00051970 mRNA downstream 325249 41784542 ~ 41795917 (-) False XLOC_026684
TCONS_00051982 mRNA upstream 792488 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051983 mRNA upstream 838390 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051984 mRNA upstream 839061 42964716 ~ 42967698 (-) True XLOC_026693
TCONS_00051985 mRNA upstream 1221862 43347517 ~ 43821191 (-) False XLOC_026696
TCONS_00051986 mRNA upstream 1226901 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051964 other downstream 809023 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1591387 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1591388 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 1962479 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 2032365 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 740428 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 1955968 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 5069482 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 6952107 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 7689542 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_02868880_02871348.mRNA True 734 mRNA 0.44 3 CI01000046 2868880 ~ 2871611 (+)