RNA id: XM_021581241.2


Basic Information

Item Value
RNA id XM_021581241.2
length 2619
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110502894
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48040588 ~ 48079485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTTGCAGTGCTTTGTCTTCACTGGCTGCCGGCTGGCGTCACTCAAGGGGCACTACTGCTCCTACAGTAAATATTTGTGTTTTCTCAACCGGTTGTGATGGTGAACGACTGAAACTGAAAAGAGAGGAATAAAACCACGAATATCGAAGTTTAGACACAATACTACGAGACGCGAGTAGGAATAAAGCTTCAGCGCAAAATGGATGAGCTCAAACACCAAGTAATGATAAACCAGTTCGTCTTGACAGCGGGTTGTGCTGCAGATCAGGCAAAGCAGCTTTTGCAAGCAGCACATTGGCAATTTGAGactGCCCTCAGTGCCTTTTTTCAAGAAACGAATATTCCATACGGTCACCATCATCAAATGatgtgcaccccagctaacacaccggCCACCCCACCCAACTTCCCTGACGCCCTCACCATGTTCTCCCGGCTGAAGGCCTCAGAGAGCTTCACCACCAGCAGCCCCATGGCCTCCATggccacctctccccctcctccacacGATTGCTGGGGCGTGCCACCGCCCCCCATGCCCATGAGCGGCCCACAGGGTCAGGGACTCTGGATTCAGAGGGAGCCACCCTCCCACCCCGCAGCCTGGCCCACGGGGGTCACCATTAACCCCCACACCCACCAACACCCGGCCACCGAACAGAAGGCGAGTGTGGCCATGGAGGCCGAGAGATGAGGGGCCAGGACTGGACGGCCctggggggaggaagggagaggaagggatgggtgaggaggaaaggaaaggtgAAGGTGTCTCTTTCCAATTGAGGATGGGAGGGTGGAGACAAAGACAGCTACGTAAACCAAGAAAAACCAAGCAACTACATAATGTGGACATTTCAACAAGAGGTGGAGAAAATGATTCAAATAAGGAATCAAAAGGAAAACATTTTAATGGAAAAAGCAGTGCACACACTTAGCAATAAGAGAGCAACTGAAATCTTTGTTAGtttgtttttcttctctctcAGTAAATGTATAGATAAGACAAAGAAATGTATGGCACTAAAGGTAATCACCATCATGCTGATGTTTTCTGACATTTAAAAGGCAGCAACTGTTCTCTTGTTCTTCTTCTTTTCTTTTTGTCTGTCCATCCAGTGTTTTCCCTCTACTGGGGACCTGTGATAAGATGTGTTTGTgttgcatggagagagagaatctgTCCATCCAGTGTTTTCCCTCTACTGGGGACCTGTGATAAGATGTGTTTGTgttgcatggagagagagaatctgTCCATCCAGTGTTTTCCCTCTACTGGGGACCTGTGATAAGATGTGTTTGTGTTGCATGGAGAGAGAGTATCTGTCCATCCAGTGTTTTCCCTCTACTGGGGACCTGTGATAAGATGTGTTTGTGTTGCATGGAGAGAGAGTATCTGTCCATCCAGTGTTTTCCCTCTACTGGGGACCTGTGATAAGAAGTGTTTGTgttgcatggagagagagaatctggCAGTGTAATGTTTTACTCTAGTATTCTCaacatgtgtctgtgtgcagtGTAACTGTCACGCACACTTACACACTCAACTAGCGAGCAGAAGAAACAGTGACATAGTTTTCATTACCCATCGGAAGGTGGAACTCTTCTTACCTCACCTGGTGGTCACCTGACTTTTTTCAGCCTATCAGGGATTCTCAACTGTTTGACAATgcagaacattttttttaaactgattgTAATTTTTCAACTCTGGTATTTTGTCATGACGATGACACTGTTCACTGCTATAGCTTTTCTTTCCAACGAAGGGTGATGCTTTACTATTAACCTGTTCTGGAAGATAGAACTGGCCACTGCAATGGTTTTGCAGATTTGGGTATTATATAAAAATCATGGTTTGATATATTAAAGTTCATGTTTTTCTTGGTGGGAGGGATGGGTGGGGTTTTGGAGGATTCGAGAGTGGGCGGGagttgtttatgttgtgtttggGAAGAGCCAATCGGAGAAGCTAAAAATAAATCTACAGAAAAAACAGACTACTATAAATACATTGACCATTTGTAAAGCAGATCTTGACACTTTGCATGAGGGATACTGTCTTGTAGCAAACACTTGAAACCGAGACGTGTTTCTGGCTGTTGGCGCAGGGGATACTACATGGTTTATCCCTCTGATTTATCATTTGTATAGCAGCATAACATACAACTGGTTATGATCACACGTGTACTGTGATCCTGCCTACAGCAGATTATGTAAAGCATTGATTAAGACATTATTCACATGCAGGGTCAGCCCCGTTCAGTTTTGTTGTCCTTGGGTTATTTCAATTGAATAAAGAATATAAAATAAACCCAGCTAGAAATCTTTGTTTATGTAAGTTCTTTTTTTAGGCAGAACATTTTCAGGAAAATATAATTATAATTCTGAGTAAACCATCTTTAATTTTACTAAAATAATGTTTCAGTTCATCCCTTTTCCATCATTTTTGTTTGAATCTGGGAATCTTGGGATGGCCTATACCTGATTGGTTTCTCAGTGTATGTTTCCCCCTGTGTGACTGTATTACCATTCCCACAATATTTGTGGACTACCTGATAATTAACTTAGCATTTTTTGTGTTCCTAAATAAATAATGTATGTCAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2143823 lncRNA downstream 9706 48030627 ~ 48030882 (-) True G1873903
TU2143818 lncRNA downstream 14883 48025485 ~ 48025705 (-) True G1873898
TU2143817 lncRNA downstream 15730 48024588 ~ 48024858 (-) True G1873897
TU2143811 lncRNA downstream 25000 48015361 ~ 48015588 (-) True G1873891
TU2143809 lncRNA downstream 29038 48011338 ~ 48011550 (-) True G1873889
TU2143854 lncRNA upstream 1558 48081043 ~ 48081298 (-) True G1873928
TU2143862 lncRNA upstream 5247 48084732 ~ 48085113 (-) True G1873936
TU2143875 lncRNA upstream 32326 48111811 ~ 48112025 (-) True G1873948
TU2143879 lncRNA upstream 37940 48117425 ~ 48123432 (-) True G1873951
TU2143890 lncRNA upstream 48108 48127593 ~ 48127884 (-) True G1873962
XM_036959909.1 mRNA downstream 151277 47801102 ~ 47889311 (-) False LOC110502890
XM_021581230.2 mRNA downstream 582579 47450667 ~ 47458009 (-) True LOC110502884
XM_021581231.2 mRNA downstream 582840 47450667 ~ 47457748 (-) False LOC110502884
XM_036960612.1 mRNA downstream 786153 47232147 ~ 47254435 (-) True LOC110502880
XM_036960611.1 mRNA downstream 786943 47232147 ~ 47253645 (-) False LOC110502880
XM_036960655.1 mRNA upstream 78226 48157711 ~ 48169661 (-) False LOC110502896
XM_036960654.1 mRNA upstream 78226 48157711 ~ 48289997 (-) True LOC110502896
XM_036960657.1 mRNA upstream 281921 48361406 ~ 48372720 (-) True LOC110502897
XR_005039226.1 mRNA upstream 301109 48380594 ~ 48385682 (-) False LOC110502900
XM_036960666.1 mRNA upstream 363984 48443469 ~ 48475356 (-) False LOC110503131
TU2143011 other downstream 780655 47257593 ~ 47259933 (-) False G1873183
TU2142821 other downstream 960798 47067908 ~ 47079790 (-) False LOC110502870
TU2142808 other downstream 1078935 46960622 ~ 46961653 (-) True G1873043
TU2142791 other downstream 1098131 46941286 ~ 46942457 (-) True G1873030
TU2142235 other downstream 1242938 46797235 ~ 46797650 (-) True G1872556
TU2144319 other upstream 441194 48520679 ~ 48521672 (-) True LOC110502901
TU2144817 other upstream 558506 48637991 ~ 48641871 (-) True LOC110503133
TU2144859 other upstream 650127 48729612 ~ 48737282 (-) True LOC110502911
TU2145415 other upstream 1225034 49304519 ~ 49307135 (-) False G1875310
TU2146049 other upstream 1702127 49781612 ~ 49846328 (-) True LOC110503141

Expression Profile