RNA id: TU2144260


Basic Information

Item Value
RNA id TU2144260
length 1672
lncRNA type sense_over
GC content 0.44
exon number 6
gene id LOC110502900
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48380366 ~ 48387106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaaactgATGTGACATGCCAAAATAATATGTGATAAGTGATataccaaaataacatgcaaaacatacAAGCCTAAAAATAAATGAATGACGGGTCGCCGCTGGACATAGAATATGCTTGATAgtgtagcgacccgcacagacagctgtgtgttatgtgttatgctaTTAGTTGGTTGTGTTGTACCTACCAGCacccagtgttcgcggggtcggacatgccaatcaacctgctatctgccaatcatgagaatgcctggaatgttctgaAGCCGGGCATCCTTGTGGTTGGTGGAGTGGCGTGGGGGCTTGGCAGGGGGATGGAGCATGTTAAGACCATGTTtagccattgttctctctcttacgtctggtCTTCGCAAGAGAAGGTCACGGTTGTTTTATAGGGTATCTTTaatttatttggcgtgggctacggccaaacTGTAGCCTGTGTAGAATTTGGTTAATAAACCGTAAATTCGTAAACTAAATTTtatgtctggacaattgttcctttatgagcTAGCCagATATGCAACCAGTAAAGGCTACTGGACAGACCCCTATGTCCAGTATTTTGTGAGGCCAGTAGGAGAACGAAGGGCTCCAGAAATCAACTGAGGTTACTATGGTTACTATGCCTGTTTGCGGGGAATGAACCACCTGGATGCCTTCCTCAGGAAGACGGTGTGTAACTGTCAGATAGTGAACCTGGGGGCAGGGCTGGACACCACTTTCTGGAGGTTAAAGGATGAACACCTCGAAACCAAGTCGACTTTCCGATGATGGCTGGCAGGAAAATACACAACAAAAAATAAGCCGTTTTATTTTTCCCTCTTTAGAAAACTTCATATAGATCACAGTTTTATTTGTTTTGACATAATTGTGGTCTCAGTAATGTCAGAAATTGACCCGTAGAGGGAGGCAGAGCCTGTCCAGCTAAACTTGTAGCGAGATCATCTCTTAATAAGAAACACACCTTAATGTGTAGTTATAATGTTGTGCACCACTTCAGGACAAAACCACTGCTGTCAAAACCTCTCATTGAGACCTATTCCACAGATTCATTATTACTAAGTAATGATGTTAAAGACATTGTCTGATACAAATCAACAGGATAACTGAATGGGATTGTCTCTTATGGTGACATTTGATTTTAACTTAGTCTTCATTTGTATTGTCTGTGTTTCATATGGCCACAGCCTAGACTCAGACGGGCACTGGATCATCGGTGCTGACCAGAGGGACATCCCAGGCCTAGATGACAAACTAAAGAAGTTCCACCTCAACCCAGAAGAATAGAGCATCTGGAGTTTCTGGATGAAAAGGAACTTCTGCAGCAGCTCCTCCAACACTCAGTATCTGCTGGGCCACCAAGGACAAGTTCAAGCAGGAGTCTCACAAGTTGCTTTCTGAACCTGGACTGTCTTGTCTTAAGCCTCTTTCTCTGTGCCATGACCAACACTatcaagagaggagagaaaaaaccCATCAACACCTTCACATCAGACTCAAgtcttgtctgctcggtgtctgtctgtctgctctgtggGAAATGCATGGCATCAACAGAATTTTACTGAATGTGTTTCCGTTGCATCCCATAAGAGCAACCACTGTCTCCCAACATGCTTTTGTGAAGAGAAGGGATGTTTCCGCTGGAAgtgtgata

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2144262 lncRNA downstream 1448 48377399 ~ 48378918 (-) True G1874274
TU2144185 lncRNA downstream 37096 48342634 ~ 48343270 (-) True G1874207
TU2144218 lncRNA downstream 122918 48257240 ~ 48257448 (-) True G1874236
TU2144217 lncRNA downstream 123220 48256908 ~ 48257146 (-) True G1874235
TU2144204 lncRNA downstream 145312 48199825 ~ 48235054 (-) True G1874225
TU2144302 lncRNA upstream 48061 48435167 ~ 48440225 (-) True G1874313
TU2144325 lncRNA upstream 70447 48457553 ~ 48458342 (-) True G1874323
TU2144337 lncRNA upstream 98896 48486002 ~ 48486217 (-) True G1874335
TU2144340 lncRNA upstream 103511 48490617 ~ 48490930 (-) True G1874338
TU2144343 lncRNA upstream 110836 48497942 ~ 48498574 (-) True G1874341
XM_036960657.1 mRNA downstream 7646 48361406 ~ 48372720 (-) True LOC110502897
XM_036960654.1 mRNA downstream 90369 48157711 ~ 48289997 (-) True LOC110502896
XM_036960655.1 mRNA downstream 210705 48157711 ~ 48169661 (-) False LOC110502896
XM_021581241.2 mRNA downstream 300881 48040588 ~ 48079485 (-) True LOC110502894
XM_036959909.1 mRNA downstream 491055 47801102 ~ 47889311 (-) False LOC110502890
XM_036960666.1 mRNA upstream 56363 48443469 ~ 48475356 (-) False LOC110503131
XM_036960664.1 mRNA upstream 63005 48450111 ~ 48475356 (-) True LOC110503131
LOC110502901 mRNA upstream 133580 48520686 ~ 48528302 (-) False LOC110502901
XM_021581246.2 mRNA upstream 144274 48531380 ~ 48534134 (-) True LOC110502902
XM_021581247.2 mRNA upstream 150786 48537892 ~ 48544347 (-) True meiob
TU2143011 other downstream 1120433 47257593 ~ 47259933 (-) False G1873183
TU2142821 other downstream 1300576 47067908 ~ 47079790 (-) False LOC110502870
TU2142808 other downstream 1418713 46960622 ~ 46961653 (-) True G1873043
TU2142791 other downstream 1437909 46941286 ~ 46942457 (-) True G1873030
TU2142235 other downstream 1582716 46797235 ~ 46797650 (-) True G1872556
TU2144319 other upstream 133573 48520679 ~ 48521672 (-) True LOC110502901
TU2144817 other upstream 250885 48637991 ~ 48641871 (-) True LOC110503133
TU2144859 other upstream 342506 48729612 ~ 48737282 (-) True LOC110502911
TU2145415 other upstream 917413 49304519 ~ 49307135 (-) False G1875310
TU2146049 other upstream 1394506 49781612 ~ 49846328 (-) True LOC110503141

Expression Profile