RNA id: XM_036960664.1


Basic Information

Item Value
RNA id XM_036960664.1
length 3346
RNA type mRNA
GC content 0.58
exon number 10
gene id LOC110503131
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48443469 ~ 48475356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCACTGACTGGCTCTatagaaatctctctctctctatccatctaacctctcctcctctgtatccATGGACTACAGTGGCTAAATGGAAAGATAAAGACTTTTAAGAAGAAGTgtgtttgtttagtttttgtcaATCTATGGATTTCTACGTATATTTTTATGATGAATCTACTTCACCAAGTCAACAGTGATTTGTATTCAGCTGCATGGATTTTCTTCTCCATCCTGGATACCTGATTCTCAGTTCCAGCTCTGACTTTTTCCTCTGAATCTCAGATCAGGGCTTTGGTATGAGTGGTGTGGTTTTAGGCACCAGAGTTAATGCAGACTGCTGAGGGTGTTCTCTGAGGTTCTCTGAGGTTCTCTGAGGTTTCTAGTAACATCTTCTGGTTCCCGGGGATCTCCGTAGGTCAACACCATCCTTGtttttctctgattcctctcttaCCTCTTGTTCCGGGCAGAGGTGACACAGACTGTTGAGGGGTGACTGCTaaagtctacctggtggtacccTCCCTTAGATCCAGAGggacctctccacccctccacctttcCCCCTACATTCCCTTCGTCTCACATGCTGGTCCCTCTCTCACCATGTTCACCAGGATCTTCATCCCCAAGAAGCACCGACAGCGGTTTGACGAGGCCGTGTCCCAGAGCTTGATCCAGAAGATCTGTCGCAGTAAGAGCATTAGCGAGCCGGGCCGGCAGGGCCGTCTGAGACGTAGCCGCAGCGAGGACCACCCTGACCGCCACCACGGCTCCAAACGGGCCAGCTCAGTACCTCGGGATCCtggggaggacagagggggacaggagagaggagagagcgggtACAGGAAGTCCACGTTGGGCAAACCTGGGCATCAATCAGAAGCCAATCAGAGCCTCCGTGCTCCCCCCAGGACAGTGAGGGTTTACAGAGGGAAGAAGAGTTTTGGGTTCACCCTGAGAGGCCATGCCCCTGTCTGCATCGACTCTGTCATCCCAGACAGCCCCGCTGAAGACTGTGGTCTCAAACCGGGCGACCGCATCCTTTTCCTCAATGGGCTGGACATGAGAAACTGTTCCCATGAGAAGGTGGTGTCCATGCTGCAGGGCAGTGGGGCCATGCCCACCCTGGTGGTGGAAGACGGACCCTCTGGTTACTCCCACTCTGACCAGAGTGACCAGGAAGACTCTCCCACAGGCCTTGCCCCTGCCGTGGCCCCCAGGTCCCGCTCCCGCTCCCCGGTCCCCCTCTGCTCCCTGCAGTGGGTGGCTGAGATCCTACCCCCCAGCATCAGGGTCCATGGTCGCACCTTTAGCCAGCAGCTGGATCATCTCCTGACGGTGCAGGAGAGATACACCATCTGCAAGTCCCTGGAGACCTTCTTccaacagagGAACGTGGACACCCTGATTGTTGATGTGTTCCCGGTGTTGGACACTCCAGCCAAGCAGGTGATCTGGCAGTTCATCTACCAGCTGTTGACCTACGAGGAGCAGGAACACTGTCAGAGCAAGATTTCACGCTTCCTTGGTTTTAAGACTGCAGcagcaacagagccagagccaggtGCAGGACAGGAGCACCATAGGAGGAGCAGCTCAGTGCGTGTGTCAGGCACCTCCTACAGAGGCACCGTACGGGAGAGGAGCTCTGATGACTGCATCATCAGAACACACCTGGGAATGGGGATTCATGTGGCTGCAccagggagtgggagtgggacacccggagagagacagtgtggagACGGCACCTCCTTCCCAGAATCCCCTGACCTGAATCACATGTCAGGAGTGTACACGGAACTGGAGAGTGTGTTCACAGGGAAGAGTGCCGTGAAGGCCATGCAGCAGAATCACAGTCGCTGCTCTCCACTGACCCAGCCTGACCGAGAGGAGCTGGGACAGACTGACGCCTATGGCCAGTCTCCAGCTCGCTCCTCTCTCAGTCAAGGTAGCACAGGGAACCGTAAATCAGGTCTGTCTCTGACATGGAAGGAACCTCTGCCCGACCCTCTGTATGAGTTCTACCACGGGGGAACCATCCCCTCTCCGGGCAGCGCTGACTCCAACCCCTATGTGAGCCTGGAGAGCCCGCCTCCATCCCCCCAGAACTCTGACGACCCCACCAGCCCCCTGTCCAGACGCaggaagcttttcaccttctccagaCCCCCCCGGAGCAGGGACACTGACAAGTTCCTGGACGCTCTGAGCGAACAGCTGGGACACCGTGTCACTCTGGTGGAAGACTTCCTCCCTGGAGAGAATGACTATGAGGAGATGAGTTTCCAGGATGAGCAGGAGGTGAGCTACCTCCCCCGCCAGCTGAGCAGTGCCAGCAGTGAGGACATCAGCAGCAACGATGAGGCCACCTCCCTCACCTACTCCTCCGGGTCAGAACACATCCCCATCCCCCCACCCCCGCAGAGCGCCCCGCCACCACCGCCCTTGCCCACCCCCTTACCCCCGCCACCCTTCGGCTTCTCCGACCCCCTCCCCATTACCCCTGTCCTCTCCCACTTCTCCCCCGAACACATCCCCCGGGCGCGCATGTCCTTCCAGCCGCAGCACCCCATCATCCCCCCTCCCCCGCCTCCTCCACGGGCCTTCATGTACAACAGGCCGTCCCTACACAAGGTGCTGCCAACCAGAGATGAGCTACAGGGCTGTGTCCACCACCAGGCTACTCAGATGACTCTCCCCCTGGGCCCTCGCTACTCTCCCCAGCCCTCTCGCCCCAGGAACCTGCCCCGCCAGGCCAGCCAGCCTCAGCCCCTGACCCAGCCCATCCTGTGTCCCCAGCCCTCCCCTCAGCCCAACAGGCAAAGCCAGCTCGCCCTCCAGAGGCACCACCAGCTTCACCACCAGCCCTACCAGCCCCAGCTGAGCCACAGCCTTCCCCCTAAAGCCCCTCACCTGTCCCAGCCCCAAAGTCACCCTCCCCAGCCCCCTCACTCACAGACCTATGAGACCCCCATCTCAGTGTCAGAACTCCAGAAACACAAGGTCCCCCCACCACCCCCTCCACCACTGCCGCCCCCCTGCGAACCGCCTCCGCTGCCCAATTCCAGTCCCTGTGCTGGGGACACCAACCACATGAGTGTGAAGAGACTGCGCTGGGAGCAGGTGGAGAACTCTGAGGGAACCATCTGGGGACAGGCATGTGTTGAGTCTATTGTACTAACCCTGAACCTGGATTCAGTACTGTTTGTTGTTGTTAAGAAATGTATTGACAGGTGAGATACTTTGTCTGCTTTAGCTTGGAGAGGACCCCGACTATGACAAACTGAGTGACATGGTGAAGTATCTCGATCTAGAGATGCATTTTGGTACCCAACGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2144302 lncRNA downstream 9886 48435167 ~ 48440225 (-) True G1874313
TU2144260 lncRNA downstream 63005 48380366 ~ 48387106 (-) True LOC110502900
TU2144262 lncRNA downstream 71193 48377399 ~ 48378918 (-) True G1874274
TU2144185 lncRNA downstream 106841 48342634 ~ 48343270 (-) True G1874207
TU2144218 lncRNA downstream 192663 48257240 ~ 48257448 (-) True G1874236
TU2144337 lncRNA upstream 10646 48486002 ~ 48486217 (-) True G1874335
TU2144340 lncRNA upstream 15261 48490617 ~ 48490930 (-) True G1874338
TU2144343 lncRNA upstream 22586 48497942 ~ 48498574 (-) True G1874341
TU2144345 lncRNA upstream 27035 48502391 ~ 48507258 (-) True G1874343
TU2144797 lncRNA upstream 133600 48608956 ~ 48609172 (-) True G1874756
XR_005039226.1 mRNA downstream 64429 48380594 ~ 48385682 (-) False LOC110502900
XM_036960657.1 mRNA downstream 77391 48361406 ~ 48372720 (-) True LOC110502897
XM_036960654.1 mRNA downstream 160114 48157711 ~ 48289997 (-) True LOC110502896
XM_036960655.1 mRNA downstream 280450 48157711 ~ 48169661 (-) False LOC110502896
XM_021581241.2 mRNA downstream 370626 48040588 ~ 48079485 (-) True LOC110502894
LOC110502901 mRNA upstream 45330 48520686 ~ 48528302 (-) False LOC110502901
XM_021581246.2 mRNA upstream 56024 48531380 ~ 48534134 (-) True LOC110502902
XM_021581247.2 mRNA upstream 62536 48537892 ~ 48544347 (-) True meiob
XM_021581248.2 mRNA upstream 87115 48562471 ~ 48594868 (-) True LOC110502904
XM_021581472.2 mRNA upstream 162240 48637596 ~ 48641914 (-) False LOC110503133
TU2143011 other downstream 1190178 47257593 ~ 47259933 (-) False G1873183
TU2142821 other downstream 1370321 47067908 ~ 47079790 (-) False LOC110502870
TU2142808 other downstream 1488458 46960622 ~ 46961653 (-) True G1873043
TU2142791 other downstream 1507654 46941286 ~ 46942457 (-) True G1873030
TU2142235 other downstream 1652461 46797235 ~ 46797650 (-) True G1872556
TU2144319 other upstream 45323 48520679 ~ 48521672 (-) True LOC110502901
TU2144817 other upstream 162635 48637991 ~ 48641871 (-) True LOC110503133
TU2144859 other upstream 254256 48729612 ~ 48737282 (-) True LOC110502911
TU2145415 other upstream 829163 49304519 ~ 49307135 (-) False G1875310
TU2146049 other upstream 1306256 49781612 ~ 49846328 (-) True LOC110503141

Expression Profile