RNA id: TCONS_00053090


Basic Information

Item Value
RNA id TCONS_00053090
length 3015
lncRNA type inter_gene
GC content 0.36
exon number 10
gene id XLOC_026687
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42183353 ~ 42205112 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGGCTCCACTTCCTGGCAGAACCTCACAGatatttcagattcAGAGATATTGGAAGTGTACCAAGATTGTATTCATTTTTGGGAAATCTTGTCAAAAGATGCTGAAAGAAACAAATCTATCTTTTTGTATAGAGGCTACCATGAGTGACCCTCTGAGTACTAAAACTTTGCTACAGATCCGGTACTTTCTTCATGAAGGAGCTCCACCAAgagAGCTGGACTGGTCCTGAGATGACATCAACTTGGTAGATGCCAAGTGCGGAGGATGGAAGGGGATAGTCAAAAAAGAGTTCATGTTTGCTGAAGGTGTGCAGTTCTGAGAACCTTCTCACGACTTGACTTAACGGACATGAAGGTTTTCGTAGAAGTTTCTTCAGCTTGTTAAGGTGATTCTCGTAAATGAACGCACTGAAATTGTCAAGGACACCATGGTGTTTTGCATCTTCTGCCAGATGGACAAGACAGTGGACGTTATAAGACAGAAATTTTGGACCGTATAGCTGTCCAAAGTGTGTCACAAACAGTCGGAGAATATCATTGGCATAGTCAATGTGATCACCAATTAGGCTGTCATTGCAAAGGATGAAGATTCCCACAAAAAGCAGCAGGAAGTTTTTGTATGCTTCAGTGGCACGTTCTTCTGGGCACTGACTAACCGTTCTGACAGCACAGATGCTTGAAATCCTGACAGCCTGCAAGTTAGAGGGCCCAGTCGAAGCCAAAGGTGTAGAAGCCGCCTCATGACACCAAGGCACACAAGGTGCATGTAGTCAAGGGGGAATCCAGAAACCATGTCCAGGGAGGTTTCCTCCAGAGGTACACACCATCCTGTATGCACTTTTCACATCCATGGTAACCTGCATGGCCTTTCACTTTTTTCAGAAATGCACGTGCAGGTGCATCACAGATCATAGAGGTGGCAGTAATACGCCTTTCTATAAATCTGTATGCCAAACGCCAATGTTAAGAAGAAGATTAACCACTTCCACGAGCTTCACGCCACGGCTTTTTACAGAATTCTGTTCTGATGTTGAGCTGTGGTCCCTTCATCCAGACGCTCTTCGAAAACCAGTCTCTTTCACAGACATcagGGTCCAGTGACTACTTTTGGGGGGTCTGCAAACTTCCAATGAGGACCATTGACCAATTGAAAAGGATTCACTCAAGGAGGGATTAAATGCCACCATCTCACCCCAATACCTTGGAAATGATGGGTCAATTATTGGGTGATGGCTTTTCCACCACCAAAACGCTTGTAAATAGTTGCCTAAAACACATGAATAGTTAATTGTTTTAGGCTGGAACcgtttaatttctaataatacattttaaaatataattgtataaaatgccatgttgttttatgtattgtaaataaacaagtcATTCAGCACCATTTCAGTAAGTAACTAATGTCAAGCAGTTGTGACTGTTGCGCATAATTATTGTGATGCTGTATAAAGTAATATCAAAGGTGACAACATACTTGCCACACAATTTTTATATCAATTGACATGACAAAAGTGCAGTTGAGGCATGACAATGTCAAAGTTGCATCAACAGCAGCTTGTAAATGGGATGATTTTGAATAAAAACTTTCttgaaattattataattattttaattggtgTCAATGATCCCTTCGATGCAAATTCGAGTGACTATTTACCTCACAATCGCATAACATGTTGTATTTGGTTATGACAAATGGGGAAAGTCAAAATTTGTCAGCAACTTGTACAAACTGTTCTGCTTGATTTTGAATTATCTGCAGATTAATTTGGGCATGCATTCATGGCAGCTTGGTGTATGTTTCAATCATGGCTATCAGCTTTTACAACAGTACTGCAAAATAAATTCTCAACATCTGAAGTGGATCTTAAATGGAAGTTCTTTTCTACTtaacttcattttaaaaaaagtgtgttaAGTCATGTTTatcaatttgatttatttagcacATCTGTACATACAATACAAACACCAAATACATCTGTGCACGGTCGTATATTATATGTGTTCACTGGCCAATGTTGTGGAtaattttgtaagactttttttctctcttgtaaataatagtattttattGTCTATCAcaatgatcatttaaaataatcttttcATTTGCAACAATGTATAAACTGCTAAAGGTTAGTGAATTTTGTGAGGCAGTATAAATTGAATTTAGTTTGTATAGTGCATTTTCTTAAAAGGCTTTTTCCTTTTCATTATCAaggtttgtttgttaattaatttagcAATTGTTGGTTTTGGCTTATTCACTTGAGGTTTAattattttgagcaaaatatgAAAAAGGGTTGTCTGTGTAGTACATCACTTTTTTAAATCCATGGCATGGGTCAAATTATTAAGCTTGTATATTGGACTTGAAAtggcaactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtatctatatGTATATGCTTTTAGCAAAATAACACTGTCGGCCAATAAAAAGCAGGTAAGAGTACTgctgttctttatttatttatttttttgcatatacaTTACTCAACCTATTGATAGATCATGAaatctaacaaaaacaaaactctaaaaaaaaaagatataaggCTGTGTGCATGATGGGTCCAAAATGTGTTCGTGtgtttggatgtgtgtgtgctgtactgtatttttatttcttatgaaaataaattaaattattaaaaaaagtttcaatagTTATTAATTCTGTGAACATATACAGTTTTCATTATTCTAACTAAAGAAGCAGTGCATAAAATAAACTGGCAGTACTAGACAGTACTAAAACcggcataaaaaaaataatcaagctTAAAATTTGAACGTCATGAATGCTAAATACATTATCAGTGACATTGCCTTAAACCCCATGCGTCGTGACATCTCTGACAGTAAACTAATTTGACACATCGACATTTCCTCATTCTAGTTCAAGCTGCTATGGTCGCGTCTGTTGTCAG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051975 lncRNA downstream 150877 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00051968 lncRNA downstream 647592 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051965 lncRNA downstream 671143 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA downstream 671143 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051957 lncRNA downstream 1220521 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00051980 lncRNA upstream 12660 42212710 ~ 42216013 (-) True XLOC_026688
TCONS_00052482 lncRNA upstream 171734 42371784 ~ 42373599 (-) False XLOC_026689
TCONS_00052481 lncRNA upstream 171734 42371784 ~ 42373599 (-) True XLOC_026689
TCONS_00052483 lncRNA upstream 348894 42548944 ~ 42746784 (-) False XLOC_026690
TCONS_00052484 lncRNA upstream 481932 42681982 ~ 42746784 (-) True XLOC_026690
TCONS_00051977 mRNA downstream 57698 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051976 mRNA downstream 96705 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051972 mRNA downstream 96776 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051982 mRNA upstream 718093 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051983 mRNA upstream 763995 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051984 mRNA upstream 764666 42964716 ~ 42967698 (-) True XLOC_026693
TCONS_00051985 mRNA upstream 1147467 43347517 ~ 43821191 (-) False XLOC_026696
TCONS_00051986 mRNA upstream 1152506 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051964 other downstream 871210 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1653574 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1653575 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 2024666 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 2094552 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 666033 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 1881573 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 4995087 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 6877712 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 7615147 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

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